Remove jobs tags and build info

ontology/agro.md

@@ -2,10 +2,6 @@
 layout: ontology_detail
 id: agro
 title: Agronomy Ontology
-build:
-  checkout: git clone  https://github.com/AgriculturalSemantics/agro.git
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: marieALaporte
@@ -29,9 +25,6 @@ dependencies:
 description: Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments
 domain: agriculture
 homepage: https://github.com/AgriculturalSemantics/agro
-jobs:
-- id: https://travis-ci.org/AgriculturalSemantics/agro
-  type: travis-ci
 license:
   label: CC BY 4.0
   url: https://creativecommons.org/licenses/by/4.0/

ontology/ceph.md

@@ -2,11 +2,6 @@
 layout: ontology_detail
 id: ceph
 title: Cephalopod Ontology
-build:
-  checkout: git clone https://github.com/obophenotype/cephalopod-ontology.git
-  method: vcs
-  path: src/ontology
-  system: git
 contact:
   email: [email protected]
   github: cmungall
@@ -15,9 +10,6 @@ contact:
 description: An anatomical and developmental ontology for cephalopods
 domain: anatomy and development
 homepage: https://github.com/obophenotype/cephalopod-ontology
-jobs:
-- id: https://travis-ci.org/obophenotype/cephalopod-ontology
-  type: travis-ci
 license:
   label: CC BY 3.0
   url: http://creativecommons.org/licenses/by/3.0/

ontology/chiro.md

@@ -2,10 +2,6 @@
 layout: ontology_detail
 id: chiro
 title: CHEBI Integrated Role Ontology
-build:
-  checkout: git clone https://github.com/obophenotype/chiro.git
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: nicolevasilevsky
@@ -22,9 +18,6 @@ dependencies:
 description: CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.
 domain: chemistry and biochemistry
 homepage: https://github.com/obophenotype/chiro
-jobs:
-- id: https://travis-ci.org/obophenotype/chiro
-  type: travis-ci
 license:
   label: CC0 1.0
   url: http://creativecommons.org/publicdomain/zero/1.0/

ontology/cl.md

@@ -2,12 +2,6 @@
 layout: ontology_detail
 id: cl
 title: Cell Ontology
-build:
-  checkout: git clone https://github.com/obophenotype/cell-ontology.git
-  email_cc: [email protected]
-  infallible: 1
-  method: vcs
-  system: git
 canonical: cl.owl
 contact:
   email: [email protected]
@@ -26,10 +20,6 @@ depicted_by: /images/CL-logo.jpg
 description: The Cell Ontology is a structured controlled vocabulary for cell types in animals.
 domain: anatomy and development
 homepage: https://obophenotype.github.io/cell-ontology/
-integration_server: http://build.berkeleybop.org/job/build-cl/
-jobs:
-- id: https://travis-ci.org/obophenotype/cell-ontology
-  type: travis-ci
 label: Cell Ontology
 license:
   label: CC BY 4.0

ontology/cteno.md

@@ -2,11 +2,6 @@
 layout: ontology_detail
 id: cteno
 title: Ctenophore Ontology
-build:
-  checkout: git clone https://github.com/obophenotype/ctenophore-ontology.git
-  method: vcs
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: cmungall
@@ -18,9 +13,6 @@ dependencies:
 description: An anatomical and developmental ontology for ctenophores (Comb Jellies)
 domain: anatomy and development
 homepage: https://github.com/obophenotype/ctenophore-ontology
-jobs:
-- id: https://travis-ci.org/obophenotype/ctenophore-ontology
-  type: travis-ci
 license:
   label: CC BY 3.0
   url: http://creativecommons.org/licenses/by/3.0/

ontology/duo.md

@@ -2,10 +2,6 @@
 layout: ontology_detail
 id: duo
 title: Data Use Ontology
-build:
-  checkout: git clone https://github.com/EBISPOT/duo.git
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: mcourtot
@@ -17,9 +13,6 @@ dependencies:
 description: DUO is an ontology which represent data use conditions.
 domain: information
 homepage: https://github.com/EBISPOT/DUO
-jobs:
-- id: https://travis-ci.org/EBISPOT/DUO
-  type: travis-ci
 license:
   label: CC BY 4.0
   url: http://creativecommons.org/licenses/by/4.0/

ontology/eco.md

@@ -2,11 +2,6 @@
 layout: ontology_detail
 id: eco
 title: Evidence ontology
-build:
-  infallible: 1
-  method: obo2owl
-  notes: switch to vcs
-  source_url: https://raw.githubusercontent.com/evidenceontology/evidenceontology/master/eco.obo
 contact:
   email: [email protected]
   github: mgiglio99
@@ -19,9 +14,6 @@ funded_by:
 - id: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1458400
   title: NSF ABI-1458400
 homepage: https://www.evidenceontology.org
-jobs:
-- id: https://travis-ci.org/evidenceontology/evidenceontology
-  type: travis-ci
 license:
   label: CC0 1.0
   url: https://creativecommons.org/publicdomain/zero/1.0/

ontology/ecocore.md

@@ -2,10 +2,6 @@
 layout: ontology_detail
 id: ecocore
 title: An ontology of core ecological entities
-build:
-  checkout: git clone https://github.com/EcologicalSemantics/ecocore.git
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: pbuttigieg
@@ -25,9 +21,6 @@ dependencies:
 description: Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.
 domain: environment
 homepage: https://github.com/EcologicalSemantics/ecocore
-jobs:
-- id: https://travis-ci.org/EcologicalSemantics/ecocore
-  type: travis-ci
 license:
   label: CC BY 3.0
   url: http://creativecommons.org/licenses/by/3.0/

ontology/ecto.md

@@ -2,10 +2,6 @@
 layout: ontology_detail
 id: ecto
 title: Environmental conditions, treatments and exposures ontology
-build:
-  checkout: git clone https://github.com/EnvironmentOntology/environmental-exposure-ontology.git
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: diatomsRcool
@@ -29,9 +25,6 @@ depicted_by: https://raw.githubusercontent.com/jmcmurry/closed-illustrations/mas
 description: ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).
 domain: environment
 homepage: https://github.com/EnvironmentOntology/environmental-exposure-ontology
-jobs:
-- id: https://travis-ci.org/EnvironmentOntology/environmental-exposure-ontology
-  type: travis-ci
 license:
   label: CC0 1.0
   url: https://creativecommons.org/publicdomain/zero/1.0/

ontology/envo.md

@@ -2,13 +2,6 @@
 layout: ontology_detail
 id: envo
 title: Environment Ontology
-build:
-  checkout: git clone https://github.com/EnvironmentOntology/envo.git
-  email_cc: [email protected]
-  infallible: 1
-  method: vcs
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: pbuttigieg
@@ -27,9 +20,6 @@ depicted_by: /images/envo.png
 description: An ontology of environmental systems, components, and processes.
 domain: environment
 homepage: http://environmentontology.org/
-jobs:
-- id: https://github.com/EnvironmentOntology/envo/blob/master/.github/workflows/qc.yml
-  type: github-action
 license:
   label: CC0 1.0
   url: http://creativecommons.org/publicdomain/zero/1.0/

ontology/fovt.md

@@ -2,10 +2,6 @@
 layout: ontology_detail
 id: fovt
 title: FuTRES Ontology of Vertebrate Traits
-build:
-  checkout: git clone https://github.com/futres/fovt.git
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: megbalk
@@ -23,9 +19,6 @@ dependencies:
 description: FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA).
 domain: phenotype
 homepage: https://github.com/futres/fovt
-jobs:
-- id: https://travis-ci.org/futres/fovt
-  type: travis-ci
 license:
   label: CC0 1.0
   url: https://creativecommons.org/publicdomain/zero/1.0/

ontology/hp.md

@@ -9,11 +9,6 @@ browsers:
 - title: Monarch Phenotype Page
   label: Monarch
   url: http://monarchinitiative.org/phenotype/HP:0000118
-build:
-  infallible: 1
-  method: archive
-  path: archive/hp
-  source_url: http://compbio.charite.de/hudson/job/hpo/lastSuccessfulBuild/artifact/*zip*/archive.zip
 contact:
   email: [email protected]
   github: drseb
@@ -23,9 +18,6 @@ depicted_by: https://raw.githubusercontent.com/obophenotype/human-phenotype-onto
 description: A structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.
 domain: phenotype
 homepage: http://www.human-phenotype-ontology.org/
-jobs:
-- id: https://travis-ci.org/obophenotype/human-phenotype-ontology
-  type: travis-ci
 license:
   label: hpo
   url: https://hpo.jax.org/app/license

ontology/hsapdv.md

@@ -2,10 +2,6 @@
 layout: ontology_detail
 id: hsapdv
 title: Human Developmental Stages
-build:
-  infallible: 1
-  method: obo2owl
-  source_url: https://raw.githubusercontent.com/obophenotype/developmental-stage-ontologies/master/src/hsapdv/hsapdv.obo
 contact:
   email: [email protected]
   github: fbastian

ontology/mco.md

@@ -2,10 +2,6 @@
 layout: ontology_detail
 id: mco
 title: Microbial Conditions Ontology
-build:
-  checkout: git clone https://github.com/microbial-conditions-ontology/microbial-conditions-ontology.git
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: citmejia
@@ -29,9 +25,6 @@ dependencies:
 description: Microbial Conditions Ontology is an ontology...
 domain: investigations
 homepage: https://github.com/microbial-conditions-ontology/microbial-conditions-ontology
-jobs:
-- id: https://travis-ci.org/microbial-conditions-ontology/microbial-conditions-ontology
-  type: travis-ci
 license:
   label: CC BY 3.0
   url: http://creativecommons.org/licenses/by/3.0/

ontology/mp.md

@@ -12,10 +12,6 @@ browsers:
 - title: Monarch Phenotype Page
   label: Monarch
   url: http://monarchinitiative.org/phenotype/MP:0000001
-build:
-  checkout: git clone https://github.com/mgijax/mammalian-phenotype-ontology.git
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: sbello
@@ -24,9 +20,6 @@ contact:
 description: Standard terms for annotating mammalian phenotypic data.
 domain: phenotype
 homepage: http://www.informatics.jax.org/searches/MP_form.shtml
-jobs:
-- id: http://build.berkeleybop.org/job/build-mp-edit
-  type: DryRunBuild
 license:
   label: CC BY 4.0
   url: http://creativecommons.org/licenses/by/4.0/

ontology/ncbitaxon.md

@@ -6,11 +6,6 @@ browsers:
 - title: NCBI Taxonomy Browser
   label: NCBI
   url: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi
-build:
-  infallible: 1
-  method: archive
-  path: archive
-  source_url: http://build.berkeleybop.org/job/build-ncbitaxon/lastSuccessfulBuild/artifact/*zip*/archive.zip
 contact:
   email: [email protected]
   github: fbastian
@@ -19,9 +14,6 @@ contact:
 description: An ontology representation of the NCBI organismal taxonomy
 domain: organisms
 homepage: https://github.com/obophenotype/ncbitaxon
-jobs:
-- id: http://build.berkeleybop.org/job/build-ncbitaxon/
-  type: ReleaseBuild
 license:
   label: CC0 1.0
   url: https://creativecommons.org/publicdomain/zero/1.0/

ontology/oba.md

@@ -2,11 +2,6 @@
 layout: ontology_detail
 id: oba
 title: Ontology of Biological Attributes
-build:
-  checkout: git clone https://github.com/obophenotype/bio-attribute-ontology.git
-  method: vcs
-  path: .
-  system: git
 contact:
   email: [email protected]
   github: cmungall
@@ -15,9 +10,6 @@ contact:
 description: A collection of biological attributes (traits) covering all kingdoms of life.
 domain: phenotype
 homepage: https://github.com/obophenotype/bio-attribute-ontology
-jobs:
-- id: https://travis-ci.org/obophenotype/bio-attribute-ontology
-  type: travis-ci
 license:
   label: CC0 1.0
   url: http://creativecommons.org/publicdomain/zero/1.0/

ontology/pato.md

@@ -6,10 +6,6 @@ browsers:
 - title: BioPortal Ontology Browser
   label: BioPortal
   url: https://bioportal.bioontology.org/ontologies/PATO
-build:
-  infallible: 1
-  method: obo2owl
-  source_url: https://raw.githubusercontent.com/pato-ontology/pato/master/pato.obo
 contact:
   email: [email protected]
   github: gkoutos
@@ -19,9 +15,6 @@ description: An ontology of phenotypic qualities (properties, attributes or char
 domain: phenotype
 homepage: https://github.com/pato-ontology/pato/
 in_foundry_order: 1
-jobs:
-- id: https://travis-ci.org/pato-ontology/pato
-  type: travis-ci
 license:
   label: CC BY 3.0
   url: http://creativecommons.org/licenses/by/3.0/