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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -2053,35 +2053,6 @@ ontologies: | |
| label: Fungal | ||
| title: Fungal gross anatomy | ||
| tracker: https://github.com/obophenotype/fungal-anatomy-ontology/issues | ||
| - activity_status: active | ||
| build: | ||
| method: obo2owl | ||
| source_url: https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo | ||
| contact: | ||
| email: [email protected] | ||
| github: wawong | ||
| label: Willy Wong | ||
| orcid: 0000-0002-8841-5870 | ||
| description: A structured controlled vocabulary of sample preparation, visualization | ||
| and imaging methods used in biomedical research. | ||
| domain: investigations | ||
| homepage: http://cellimagelibrary.org/ | ||
| id: fbbi | ||
| layout: ontology_detail | ||
| license: | ||
| label: CC BY 4.0 | ||
| logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png | ||
| url: https://creativecommons.org/licenses/by/4.0/ | ||
| ontology_purl: http://purl.obolibrary.org/obo/fbbi.owl | ||
| preferredPrefix: FBbi | ||
| products: | ||
| - id: fbbi.owl | ||
| ontology_purl: http://purl.obolibrary.org/obo/fbbi.owl | ||
| repository: https://github.com/CRBS/Biological_Imaging_Methods_Ontology | ||
| tags: | ||
| - imaging experiments | ||
| title: Biological Imaging Methods Ontology | ||
| tracker: https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues | ||
| - activity_status: active | ||
| browsers: | ||
| - label: FB | ||
|
|
@@ -3503,36 +3474,6 @@ ontologies: | |
| repository: https://github.com/jannahastings/mental-functioning-ontology | ||
| title: Mental Functioning Ontology | ||
| tracker: https://github.com/jannahastings/mental-functioning-ontology/issues | ||
| - activity_status: active | ||
| contact: | ||
| email: [email protected] | ||
| github: RDruzinsky | ||
| label: Robert Druzinsky | ||
| orcid: 0000-0002-1572-1316 | ||
| dependencies: | ||
| - id: uberon | ||
| description: The Mammalian Feeding Muscle Ontology is an antomy ontology for the | ||
| muscles of the head and neck that participate in feeding, swallowing, and other | ||
| oral-pharyngeal behaviors. | ||
| domain: anatomy and development | ||
| homepage: https://github.com/rdruzinsky/feedontology | ||
| id: mfmo | ||
| layout: ontology_detail | ||
| license: | ||
| label: CC BY 3.0 | ||
| logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png | ||
| url: http://creativecommons.org/licenses/by/3.0/ | ||
| ontology_purl: http://purl.obolibrary.org/obo/mfmo.owl | ||
| preferredPrefix: MFMO | ||
| products: | ||
| - id: mfmo.owl | ||
| ontology_purl: http://purl.obolibrary.org/obo/mfmo.owl | ||
| repository: https://github.com/RDruzinsky/feedontology | ||
| taxon: | ||
| id: NCBITaxon:40674 | ||
| label: Mammalian | ||
| title: Mammalian Feeding Muscle Ontology | ||
| tracker: https://github.com/RDruzinsky/feedontology/issues | ||
| - activity_status: active | ||
| build: | ||
| method: owl2obo | ||
|
|
@@ -4696,30 +4637,6 @@ ontologies: | |
| label: Homo sapiens | ||
| title: Ontology for General Medical Science | ||
| tracker: https://github.com/OGMS/ogms/issues | ||
| - activity_status: active | ||
| contact: | ||
| email: [email protected] | ||
| github: linikujp | ||
| label: Asiyah Yu Lin | ||
| orcid: 0000-0002-5379-5359 | ||
| description: An application ontology to represent genetic susceptibility to a specific | ||
| disease, adverse event, or a pathological process. | ||
| domain: investigations | ||
| homepage: https://github.com/linikujp/OGSF | ||
| id: ogsf | ||
| layout: ontology_detail | ||
| license: | ||
| label: CC BY 3.0 | ||
| logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png | ||
| url: https://creativecommons.org/licenses/by/3.0/ | ||
| ontology_purl: http://purl.obolibrary.org/obo/ogsf.owl | ||
| preferredPrefix: OGSF | ||
| products: | ||
| - id: ogsf.owl | ||
| ontology_purl: http://purl.obolibrary.org/obo/ogsf.owl | ||
| repository: https://github.com/linikujp/OGSF | ||
| title: Ontology of Genetic Susceptibility Factor | ||
| tracker: https://github.com/linikujp/OGSF/issues | ||
| - activity_status: active | ||
| build: | ||
| method: owl2obo | ||
|
|
@@ -4903,17 +4820,18 @@ ontologies: | |
| - activity_status: active | ||
| build: | ||
| method: owl2obo | ||
| source_url: https://github.com/ufbmi/OMRSE | ||
| source_url: https://github.com/mcwdsi/OMRSE | ||
| contact: | ||
| email: [email protected] | ||
| github: hoganwr | ||
| label: Bill Hogan | ||
| orcid: 0000-0002-9881-1017 | ||
| description: This ontology covers the domain of social entities that are related | ||
| to health care, such as demographic information and the roles of various individuals | ||
| and organizations. | ||
| description: The Ontology for Modeling and Representation of Social Entities (OMRSE) | ||
| is an OBO Foundry ontology that represents the various entities that arise from | ||
| human social interactions, such as social acts, social roles, social groups, and | ||
| organizations. | ||
| domain: health | ||
| homepage: https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview | ||
| homepage: https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview | ||
| id: omrse | ||
| layout: ontology_detail | ||
| license: | ||
|
|
@@ -4928,14 +4846,15 @@ ontologies: | |
| publications: | ||
| - id: https://www.ncbi.nlm.nih.gov/pubmed/27406187 | ||
| title: 'The ontology of medically related social entities: recent developments' | ||
| repository: https://github.com/ufbmi/OMRSE | ||
| repository: https://github.com/mcwdsi/OMRSE | ||
| tags: | ||
| - medicine | ||
| - social | ||
| - behavior | ||
| taxon: | ||
| id: NCBITaxon:9606 | ||
| label: Homo sapiens | ||
| title: Ontology of Medically Related Social Entities | ||
| tracker: https://github.com/ufbmi/OMRSE/issues | ||
| title: Ontology for Modeling and Representation of Social Entities | ||
| tracker: https://github.com/mcwdsi/OMRSE/issues | ||
| - activity_status: active | ||
| contact: | ||
| email: [email protected] | ||
|
|
@@ -8048,6 +7967,65 @@ ontologies: | |
| title: Types and effects of protein variations | ||
| title: Variation Ontology | ||
| tracker: http://variationontology.org/instructions.shtml | ||
| - activity_status: inactive | ||
| build: | ||
| method: obo2owl | ||
| source_url: https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo | ||
| contact: | ||
| email: [email protected] | ||
| github: wawong | ||
| label: Willy Wong | ||
| orcid: 0000-0002-8841-5870 | ||
| description: A structured controlled vocabulary of sample preparation, visualization | ||
| and imaging methods used in biomedical research. | ||
| domain: investigations | ||
| homepage: http://cellimagelibrary.org/ | ||
| id: fbbi | ||
| layout: ontology_detail | ||
| license: | ||
| label: CC BY 4.0 | ||
| logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png | ||
| url: https://creativecommons.org/licenses/by/4.0/ | ||
| ontology_purl: http://purl.obolibrary.org/obo/fbbi.owl | ||
| preferredPrefix: FBbi | ||
| products: | ||
| - id: fbbi.owl | ||
| ontology_purl: http://purl.obolibrary.org/obo/fbbi.owl | ||
| repository: https://github.com/CRBS/Biological_Imaging_Methods_Ontology | ||
| tags: | ||
| - imaging experiments | ||
| title: Biological Imaging Methods Ontology | ||
| tracker: https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues | ||
| - activity_status: inactive | ||
| contact: | ||
| email: [email protected] | ||
| github: RDruzinsky | ||
| label: Robert Druzinsky | ||
| orcid: 0000-0002-1572-1316 | ||
| dependencies: | ||
| - id: uberon | ||
| description: The Mammalian Feeding Muscle Ontology is an antomy ontology for the | ||
| muscles of the head and neck that participate in feeding, swallowing, and other | ||
| oral-pharyngeal behaviors. | ||
| domain: anatomy and development | ||
| homepage: https://github.com/rdruzinsky/feedontology | ||
| id: mfmo | ||
| layout: ontology_detail | ||
| license: | ||
| label: CC BY 3.0 | ||
| logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png | ||
| url: http://creativecommons.org/licenses/by/3.0/ | ||
| ontology_purl: http://purl.obolibrary.org/obo/mfmo.owl | ||
| preferredPrefix: MFMO | ||
| products: | ||
| - id: mfmo.owl | ||
| ontology_purl: http://purl.obolibrary.org/obo/mfmo.owl | ||
| repository: https://github.com/RDruzinsky/feedontology | ||
| taxon: | ||
| id: NCBITaxon:40674 | ||
| label: Mammalian | ||
| title: Mammalian Feeding Muscle Ontology | ||
| tracker: https://github.com/RDruzinsky/feedontology/issues | ||
| - activity_status: inactive | ||
| contact: | ||
| email: [email protected] | ||
|
|
@@ -8071,6 +8049,30 @@ ontologies: | |
| repository: https://github.com/carrineblank/MicrO | ||
| title: Ontology of Prokaryotic Phenotypic and Metabolic Characters | ||
| tracker: https://github.com/carrineblank/MicrO/issues | ||
| - activity_status: inactive | ||
| contact: | ||
| email: [email protected] | ||
| github: linikujp | ||
| label: Asiyah Yu Lin | ||
| orcid: 0000-0002-5379-5359 | ||
| description: An application ontology to represent genetic susceptibility to a specific | ||
| disease, adverse event, or a pathological process. | ||
| domain: investigations | ||
| homepage: https://github.com/linikujp/OGSF | ||
| id: ogsf | ||
| layout: ontology_detail | ||
| license: | ||
| label: CC BY 3.0 | ||
| logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png | ||
| url: https://creativecommons.org/licenses/by/3.0/ | ||
| ontology_purl: http://purl.obolibrary.org/obo/ogsf.owl | ||
| preferredPrefix: OGSF | ||
| products: | ||
| - id: ogsf.owl | ||
| ontology_purl: http://purl.obolibrary.org/obo/ogsf.owl | ||
| repository: https://github.com/linikujp/OGSF | ||
| title: Ontology of Genetic Susceptibility Factor | ||
| tracker: https://github.com/linikujp/OGSF/issues | ||
| - activity_status: inactive | ||
| build: | ||
| method: obo2owl | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,18 +1,18 @@ | ||
| --- | ||
| layout: ontology_detail | ||
| id: omrse | ||
| title: Ontology of Medically Related Social Entities | ||
| title: Ontology for Modeling and Representation of Social Entities | ||
| build: | ||
| method: owl2obo | ||
| source_url: https://github.com/ufbmi/OMRSE | ||
| source_url: https://github.com/mcwdsi/OMRSE | ||
| contact: | ||
| email: [email protected] | ||
| github: hoganwr | ||
| label: Bill Hogan | ||
| orcid: 0000-0002-9881-1017 | ||
| description: This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations. | ||
| description: The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations. | ||
| domain: health | ||
| homepage: https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview | ||
| homepage: https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview | ||
| license: | ||
| label: CC BY 4.0 | ||
| url: https://creativecommons.org/licenses/by/4.0/ | ||
|
|
@@ -22,14 +22,15 @@ products: | |
| publications: | ||
| - id: https://www.ncbi.nlm.nih.gov/pubmed/27406187 | ||
| title: 'The ontology of medically related social entities: recent developments' | ||
| repository: https://github.com/ufbmi/OMRSE | ||
| repository: https://github.com/mcwdsi/OMRSE | ||
| tags: | ||
| - medicine | ||
| - social | ||
| - behavior | ||
| taxon: | ||
| id: NCBITaxon:9606 | ||
| label: Homo sapiens | ||
| tracker: https://github.com/ufbmi/OMRSE/issues | ||
| tracker: https://github.com/mcwdsi/OMRSE/issues | ||
| activity_status: active | ||
| --- | ||
|
|
||
| This ontology covers the domain of social entities that are related to health care, such as demographic information (social entities for recording gender (but not sex) and marital status, for example) and the roles of various individuals and organizations (patient, hospital,etc.) | ||
| For more information on the social entities represented in OMRSE, please visit our wiki page or list of publications. OMRSE is designed to be a mid-level ontology that bridges the gap between BFO, which it reuses for its top-level hierarchy, and more specific domain or application ontologies. For this reason, we are always open to working with ontology developers who want to build interoperability between their projects and OMRSE. | ||
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