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Update OBO foundry metadata #2560

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Apr 2, 2024
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Update OBO foundry metadata #2560

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34 changes: 27 additions & 7 deletions _config.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -471,11 +471,11 @@ ontologies:
tracker: https://github.com/evoinfo/cdao/issues
- activity_status: active
build:
checkout: git clone https://github.com/Southern-Cross-Plant-Science/cdno.git
checkout: git clone https://github.com/CompositionalDietaryNutritionOntology/cdno.git
path: .
system: git
contact:
email: [email protected]
email: [email protected]
github: LilyAndres
label: Liliana Andres Hernandez
orcid: 0000-0002-7696-731X
Expand Down Expand Up @@ -505,12 +505,12 @@ ontologies:
name: Compositional Dietary Nutrition Ontology additional release in OBO format
ontology_purl: http://purl.obolibrary.org/obo/cdno.obo
publications:
- id: https://doi.org/10.1002/csc2.20092
title: Knowledge representation and data sharing to unlock crop variation for
nutritional food security
repository: https://github.com/Southern-Cross-Plant-Science/cdno
- id: https://doi.org/10.3389/fnut.2022.928837
title: Establishing a Common Nutritional Vocabulary - From Food Production to
Diet
repository: https://github.com/CompositionalDietaryNutritionOntology/cdno
title: Compositional Dietary Nutrition Ontology
tracker: https://github.com/Southern-Cross-Plant-Science/cdno/issues
tracker: https://github.com/CompositionalDietaryNutritionOntology/cdno/issues
- activity_status: active
browsers:
- label: CHEBI
Expand Down Expand Up @@ -4881,6 +4881,26 @@ ontologies:
label: Homo sapiens
title: Ontology for Modeling and Representation of Social Entities
tracker: https://github.com/mcwdsi/OMRSE/issues
usages:
- description: OMRSE is used by the CAFÊ and TIPTOE projects
examples:
- description: The project creates and maintains the Ontology of Organizational
Structures of Trauma centers and Trauma systems or OOSTT, which reuses OMRSE
terms
url: https://www.ebi.ac.uk/ols4/ontologies/oostt/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FOOSTT_00000089
type: owl:Ontology
user: https://boar.uams.edu/projects/comparative-assessment-framework-for-environments-of-trauma-care
- description: OMRSE is used by the Intervention Setting Ontology component of the
Behavior Change Intervention Ontology
examples:
- description: Several facility classes extend OMRSE's 'facility'
url: https://www.ebi.ac.uk/ols4/ontologies/bcio/classes/http%253A%252F%252Fhumanbehaviourchange.org%252Fontology%252FBCIO_026022
publications:
- id: https://doi.org/10.12688/wellcomeopenres.15904.1
title: 'Development of an Intervention Setting Ontology for behaviour change:
Specifying where interventions take place'
type: owl:Ontology
user: https://www.humanbehaviourchange.org
- activity_status: active
contact:
email: [email protected]
Expand Down
44 changes: 37 additions & 7 deletions registry/ontologies.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -639,12 +639,12 @@
{
"activity_status": "active",
"build": {
"checkout": "git clone https://github.com/Southern-Cross-Plant-Science/cdno.git",
"checkout": "git clone https://github.com/CompositionalDietaryNutritionOntology/cdno.git",
"path": ".",
"system": "git"
},
"contact": {
"email": "[email protected]",
"email": "[email protected]",
"github": "LilyAndres",
"label": "Liliana Andres Hernandez",
"orcid": "0000-0002-7696-731X"
Expand Down Expand Up @@ -692,13 +692,13 @@
],
"publications": [
{
"id": "https://doi.org/10.1002/csc2.20092",
"title": "Knowledge representation and data sharing to unlock crop variation for nutritional food security"
"id": "https://doi.org/10.3389/fnut.2022.928837",
"title": "Establishing a Common Nutritional Vocabulary - From Food Production to Diet"
}
],
"repository": "https://github.com/Southern-Cross-Plant-Science/cdno",
"repository": "https://github.com/CompositionalDietaryNutritionOntology/cdno",
"title": "Compositional Dietary Nutrition Ontology",
"tracker": "https://github.com/Southern-Cross-Plant-Science/cdno/issues"
"tracker": "https://github.com/CompositionalDietaryNutritionOntology/cdno/issues"
},
{
"activity_status": "active",
Expand Down Expand Up @@ -6781,7 +6781,37 @@
"label": "Homo sapiens"
},
"title": "Ontology for Modeling and Representation of Social Entities",
"tracker": "https://github.com/mcwdsi/OMRSE/issues"
"tracker": "https://github.com/mcwdsi/OMRSE/issues",
"usages": [
{
"description": "OMRSE is used by the CAFÊ and TIPTOE projects",
"examples": [
{
"description": "The project creates and maintains the Ontology of Organizational Structures of Trauma centers and Trauma systems or OOSTT, which reuses OMRSE terms",
"url": "https://www.ebi.ac.uk/ols4/ontologies/oostt/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FOOSTT_00000089"
}
],
"type": "owl:Ontology",
"user": "https://boar.uams.edu/projects/comparative-assessment-framework-for-environments-of-trauma-care"
},
{
"description": "OMRSE is used by the Intervention Setting Ontology component of the Behavior Change Intervention Ontology",
"examples": [
{
"description": "Several facility classes extend OMRSE's 'facility'",
"url": "https://www.ebi.ac.uk/ols4/ontologies/bcio/classes/http%253A%252F%252Fhumanbehaviourchange.org%252Fontology%252FBCIO_026022"
}
],
"publications": [
{
"id": "https://doi.org/10.12688/wellcomeopenres.15904.1",
"title": "Development of an Intervention Setting Ontology for behaviour change: Specifying where interventions take place"
}
],
"type": "owl:Ontology",
"user": "https://www.humanbehaviourchange.org"
}
]
},
{
"activity_status": "active",
Expand Down
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