pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <artifactId>portal</artifactId>
    <groupId>com.odysseusinc.arachne</groupId>
    <version>1.20.0-SNAPSHOT</version>
    <packaging>jar</packaging>

    <parent>
        <groupId>org.springframework.boot</groupId>
        <artifactId>spring-boot-starter-parent</artifactId>
        <version>2.2.13.RELEASE</version>
        <relativePath/>
    </parent>

    <properties>
        <spring.boot.version>2.1.18.RELEASE</spring.boot.version>
        <start-class>com.odysseusinc.arachne.portal.PortalStarter</start-class>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <java.version>1.8</java.version>
        <jjwt.version>0.10.8</jjwt.version>
        <activemq.version>5.15.14</activemq.version>
        <assertj.version>3.19.0</assertj.version>
        <build.number>dev</build.number>
        <clamav.version>2.0.1</clamav.version>
        <commons.fileupload.version>1.4</commons.fileupload.version>
        <commonsCsv.version>1.7</commonsCsv.version>
        <dockerImagePrefix>hub.odysseusinc.com</dockerImagePrefix>
        <ehcache.version>1.3.0</ehcache.version>
        <gson.version>2.7</gson.version>
        <jodConverter.version>4.3.0</jodConverter.version>
        <postgresql.version>42.2.25</postgresql.version>
        <springRetryVersion>1.2.4.RELEASE</springRetryVersion>
        <bcprov-jdk15on.version>1.68</bcprov-jdk15on.version>
        
        <!-- Referencing https://github.com/OHDSI/ArachneUI -->
        <portal-resources.version>1.20.0-SNAPSHOT</portal-resources.version>
    </properties>

    <profiles>
        <profile>
            <id>test</id>
            <properties>
                <env>integration</env>
                <latestSuffix>-snapshot</latestSuffix>
            </properties>
        </profile>
        <profile>
            <id>selenium-test</id>
            <properties>
                <env>selenium-test</env>
                <latestSuffix>-selenium-test</latestSuffix>
            </properties>
        </profile>
        <profile>
            <id>prod</id>
            <properties>
                <env>prod</env>
                <latestSuffix>-prod</latestSuffix>
            </properties>
        </profile>
        <profile>
            <id>dev</id>
            <activation>
                <activeByDefault>true</activeByDefault>
            </activation>
            <properties>
                <env>dev</env>
                <latestSuffix>-dev</latestSuffix>
            </properties>
            <build>
                <resources>
                    <resource>
                        <filtering>true</filtering>
                        <directory>src/main/resources</directory>
                        <includes>
                            <include>application*.yml</include>
                        </includes>
                    </resource>
                </resources>
            </build>
        </profile>
        <profile>
            <id>qa</id>
            <properties>
                <env>qa</env>
                <latestSuffix>-qa</latestSuffix>
            </properties>
        </profile>
        <profile>
            <id>ci</id>
            <activation>
                <property>
                    <name>env.BUILD_NUMBER</name>
                </property>
            </activation>
            <properties>
                <build.number>${env.BUILD_NUMBER}</build.number>
            </properties>
        </profile>
    </profiles>

    <dependencyManagement>
        <dependencies>
            <dependency>
                <artifactId>solr-solrj</artifactId>
                <groupId>org.apache.solr</groupId>
                <version>8.2.0</version>
            </dependency>
            <dependency>
                <groupId>org.ohdsi</groupId>
                <artifactId>authenticator</artifactId>
                <version>0.0.3-QA</version>
            </dependency>
            <dependency>
                <groupId>commons-io</groupId>
                <artifactId>commons-io</artifactId>
            </dependency>
        </dependencies>
    </dependencyManagement>

    <dependencies>
        <dependency>
            <groupId>com.odysseusinc.arachne</groupId>
            <artifactId>arachne-commons</artifactId>
            <version>1.19.0</version>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>com.odysseusinc.arachne</groupId>
            <artifactId>arachne-common-utils</artifactId>
            <version>1.19.0</version>
        </dependency>

        <dependency>
            <groupId>org.bouncycastle</groupId>
            <artifactId>bcprov-jdk15on</artifactId>
            <version>${bcprov-jdk15on.version}</version>
        </dependency>

        <dependency>
            <groupId>com.odysseusinc.arachne</groupId>
            <artifactId>arachne-no-handler-found-exception-util</artifactId>
            <version>1.19.0</version>
            <type>jar</type>
        </dependency>
        <dependency>
            <artifactId>arachne-sys-settings</artifactId>
            <groupId>com.odysseusinc.arachne</groupId>
            <version>1.19.0</version>
        </dependency>
        <dependency>
            <groupId>com.odysseusinc.arachne</groupId>
            <artifactId>arachne-storage</artifactId>
            <version>1.19.0</version>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-web</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-security</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-logging</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-data-jpa</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-mail</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-test</artifactId>
            <exclusions>
                <exclusion>
                    <groupId>org.assertj</groupId>
                    <artifactId>assertj-core</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-websocket</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.security</groupId>
            <artifactId>spring-security-acl</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-oauth2-client</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.security</groupId>
            <artifactId>spring-security-test</artifactId>
        </dependency>
        <dependency>
            <groupId>org.postgresql</groupId>
            <artifactId>postgresql</artifactId>
            <version>${postgresql.version}</version>
        </dependency>
        <dependency>
            <groupId>org.flywaydb</groupId>
            <artifactId>flyway-core</artifactId>
        </dependency>
        <dependency>
            <groupId>com.google.code.gson</groupId>
            <artifactId>gson</artifactId>
            <version>${gson.version}</version>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-lang3</artifactId>
        </dependency>
        <dependency>
            <groupId>io.jsonwebtoken</groupId>
            <artifactId>jjwt-api</artifactId>
            <version>${jjwt.version}</version>
        </dependency>
        <dependency>
            <groupId>io.jsonwebtoken</groupId>
            <artifactId>jjwt-impl</artifactId>
            <version>${jjwt.version}</version>
            <scope>runtime</scope>
        </dependency>
        <dependency>
            <groupId>io.jsonwebtoken</groupId>
            <artifactId>jjwt-jackson</artifactId>
            <version>${jjwt.version}</version>
            <scope>runtime</scope>
        </dependency>
        <dependency>
            <groupId>org.imgscalr</groupId>
            <artifactId>imgscalr-lib</artifactId>
            <version>4.2</version>
        </dependency>
        <dependency>
            <groupId>com.drewnoakes</groupId>
            <artifactId>metadata-extractor</artifactId>
            <version>2.9.1</version>
        </dependency>

        <dependency>
            <groupId>com.github.sgoertzen</groupId>
            <artifactId>sonar-break-maven-plugin</artifactId>
            <version>1.2.2</version>
        </dependency>
        <dependency>
            <groupId>net.lingala.zip4j</groupId>
            <artifactId>zip4j</artifactId>
            <version>2.6.4</version>
        </dependency>
        <dependency>
            <groupId>edu.vt.middleware</groupId>
            <artifactId>vt-password</artifactId>
            <version>3.1.2</version>
        </dependency>
        <dependency>
            <groupId>edu.vt.middleware</groupId>
            <artifactId>vt-dictionary</artifactId>
            <version>3.0</version>
        </dependency>
        <dependency>
            <artifactId>solr-solrj</artifactId>
            <groupId>org.apache.solr</groupId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-thymeleaf</artifactId>
        </dependency>

        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-cache</artifactId>
        </dependency>
        <dependency>
            <groupId>org.ehcache</groupId>
            <artifactId>ehcache</artifactId>
            <version>3.3.1</version>
        </dependency>
        <dependency>
            <groupId>javax.cache</groupId>
            <artifactId>cache-api</artifactId>
            <version>1.0.0</version>
        </dependency>
        <dependency>
            <groupId>commons-beanutils</groupId>
            <artifactId>commons-beanutils</artifactId>
            <version>1.9.4</version>
        </dependency>
               <dependency>
            <groupId>org.dbunit</groupId>
            <artifactId>dbunit</artifactId>
            <version>2.7.0</version>
            <type>jar</type>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>com.github.springtestdbunit</groupId>
            <artifactId>spring-test-dbunit</artifactId>
            <version>1.3.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>commons-fileupload</groupId>
            <artifactId>commons-fileupload</artifactId>
            <version>${commons.fileupload.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.assertj</groupId>
            <artifactId>assertj-core</artifactId>
            <version>${assertj.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-configuration-processor</artifactId>
            <optional>true</optional>
        </dependency>
        <dependency>
            <groupId>com.odysseusinc.arachne</groupId>
            <artifactId>execution-engine-commons</artifactId>
            <version>1.19.0</version>
        </dependency>
        <dependency>
            <groupId>org.ohdsi.sql</groupId>
            <artifactId>SqlRender</artifactId>
            <version>1.9.0</version>
        </dependency>
        <dependency>
            <groupId>com.cosium.spring.data</groupId>
            <artifactId>spring-data-jpa-entity-graph</artifactId>
            <version>2.2.8</version>
        </dependency>
        <!-- Ensure that spring-data-jpa version is taken from parent dependency management, not from spring-data-jpa-entity-graph -->
        <dependency>
            <groupId>org.springframework.data</groupId>
            <artifactId>spring-data-jpa</artifactId>
        </dependency>
        <dependency>
            <groupId>org.jodconverter</groupId>
            <artifactId>jodconverter-local</artifactId>
            <version>${jodConverter.version}</version>
        </dependency>
        <dependency>
            <groupId>org.jodconverter</groupId>
            <artifactId>jodconverter-spring-boot-starter</artifactId>
            <version>${jodConverter.version}</version>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-csv</artifactId>
            <version>${commonsCsv.version}</version>
        </dependency>
        <dependency>
            <groupId>xyz.capybara</groupId>
            <artifactId>clamav-client</artifactId>
            <version>${clamav.version}</version>
        </dependency>
        <dependency>
            <groupId>org.springframework.retry</groupId>
            <artifactId>spring-retry</artifactId>
            <version>${springRetryVersion}</version>
        </dependency>
        <dependency>
            <groupId>net.htmlparser.jericho</groupId>
            <artifactId>jericho-html</artifactId>
            <version>3.4</version>
        </dependency>
        <dependency>
            <groupId>org.ohdsi</groupId>
            <artifactId>authenticator</artifactId>
        </dependency>
        <dependency>
            <groupId>org.testcontainers</groupId>
            <artifactId>testcontainers</artifactId>
            <version>1.16.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.testcontainers</groupId>
            <artifactId>junit-jupiter</artifactId>
            <version>1.16.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.testcontainers</groupId>
            <artifactId>postgresql</artifactId>
            <version>1.16.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.testcontainers</groupId>
            <artifactId>solr</artifactId>
            <version>1.16.2</version>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <build>
        <finalName>portal</finalName>
        <resources>
            <resource>
                <filtering>false</filtering>
                <directory>src/main/resources</directory>
                <includes>
                    <include>**/*</include>
                </includes>
                <excludes>
                    <exclude>application*.yml</exclude>
                </excludes>
            </resource>
            <resource>
                <filtering>true</filtering>
                <directory>src/main/resources</directory>
                <includes>
                    <include>application.yml</include>
                    <include>application-base.yml</include>
                    <include>application-${env}.yml</include>
                </includes>
            </resource>
            <resource>
                <directory>target/meta</directory>
                <targetPath>META-INF</targetPath>
            </resource>
        </resources>
        <plugins>
            <plugin>
                <artifactId>maven-clean-plugin</artifactId>
                <version>3.0.0</version>
                <configuration>
                    <filesets>
                        <fileset>
                            <directory>src/main/resources/public</directory>
                            <!--<excludes>
                                <exclude>**/index.html</exclude>
                            </excludes>-->
                            <followSymlinks>false</followSymlinks>
                        </fileset>
                    </filesets>
                </configuration>
            </plugin>
            <plugin>
                <groupId>ru.yaal.maven</groupId>
                <artifactId>write-text-files-maven-plugin</artifactId>
                <version>1.1</version>
                <executions>
                    <execution>
                        <id>write-text-files</id>
                        <phase>generate-resources</phase>
                        <goals>
                            <goal>write-text-files</goal>
                        </goals>
                        <configuration>
                            <charset>UTF-8</charset>
                            <files>
                                <file>
                                    <path>target/meta/version.properties</path>
                                    <lines>
                                        <line>buildNumber: ${build.number}</line>
                                        <line>buildId: ${maven.build.timestamp}</line>
                                        <line>version: ${project.version}</line>
                                    </lines>
                                </file>
                            </files>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-dependency-plugin</artifactId>
                <version>3.0.0</version>
                <executions>
                    <execution>
                        <id>unpack</id>
                        <phase>generate-resources</phase>
                        <goals>
                            <goal>unpack</goal>
                        </goals>
                        <configuration>
                            <artifactItems>
                                <artifactItem>
                                    <groupId>com.odysseusinc.arachne</groupId>
                                    <artifactId>portal-resources</artifactId>
                                    <version>${portal-resources.version}</version>
                                    <type>zip</type>
                                    <overWrite>false</overWrite>
                                    <outputDirectory>${project.basedir}/src/main/resources/public/</outputDirectory>
                                </artifactItem>
                            </artifactItems>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.springframework.boot</groupId>
                <artifactId>spring-boot-maven-plugin</artifactId>
                <executions>
                    <execution>
                        <id>repackage</id>
                        <goals>
                            <goal>repackage</goal>
                        </goals>
                        <configuration>
                            <classifier>exec</classifier>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>com.spotify</groupId>
                <artifactId>docker-maven-plugin</artifactId>
                <version>1.2.2</version>
                <configuration>
                    <imageName>${dockerImagePrefix}/${project.artifactId}</imageName>
                    <imageTags>
                        <imageTag>${project.version}</imageTag>
                        <imageTag>latest${latestSuffix}</imageTag>
                    </imageTags>
                    <dockerDirectory>src/main/docker</dockerDirectory>
                    <resources>
                        <resource>
                            <directory>${project.build.directory}</directory>
                            <include>${project.build.finalName}-exec.${project.packaging}</include>
                        </resource>
                    </resources>
                    <serverId>hub.odysseusinc.com</serverId>
                    <registryUrl>https://hub.odysseusinc.com/v2/</registryUrl>
                </configuration>
                <executions>
                    <execution>
                        <phase>install</phase>
                        <goals>
                            <goal>build</goal>
                        </goals>
                    </execution>
                    <execution>
                        <id>deploy</id>
                        <phase>deploy</phase>
                        <goals><goal>push</goal></goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-checkstyle-plugin</artifactId>
                <version>3.1.1</version>
                <configuration>
                    <configLocation>${project.basedir}/google_checkstyle.xml</configLocation>
                    <consoleOutput>true</consoleOutput>
                    <failsOnError>true</failsOnError>
                    <linkXRef>true</linkXRef>
                </configuration>
                <executions>
                    <execution>
                        <id>validate</id>
                        <phase>validate</phase>
                        <goals>
                            <goal>check</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

        </plugins>
        <testResources>
            <testResource>
                <directory>src/test/resources</directory>
                <filtering>true</filtering>
            </testResource>
            <testResource>
                <directory>src/test/resources-binary</directory>
                <filtering>false</filtering>
            </testResource>
        </testResources>
        <pluginManagement>
            <plugins>
                <plugin>
                    <groupId>org.sonarsource.scanner.maven</groupId>
                    <artifactId>sonar-maven-plugin</artifactId>
                    <version>3.2</version>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-checkstyle-plugin</artifactId>
                    <version>2.17</version>
                </plugin>
            </plugins>
        </pluginManagement>
    </build>

    <repositories>
        <repository>
            <id>community-libs-snapshot-local</id>
            <name>community-libs-snapshot-local</name>
            <releases>
                <enabled>false</enabled>
                <updatePolicy>always</updatePolicy>
            </releases>
            <snapshots>
                <enabled>true</enabled>
                <updatePolicy>always</updatePolicy>
            </snapshots>
            <url>https://nexus.odysseusinc.com/repository/community-libs-snapshot-local</url>
        </repository>
        <repository>
            <id>community-libs-release-local</id>
            <name>community-libs-release-local</name>
            <releases>
                <enabled>true</enabled>
                <updatePolicy>always</updatePolicy>
            </releases>
            <snapshots>
                <enabled>false</enabled>
                <updatePolicy>always</updatePolicy>
            </snapshots>
            <url>https://nexus.odysseusinc.com/repository/community-libs-release-local</url>
        </repository>
        <repository>
            <id>ohdsi</id>
            <name>repo.ohdsi.org</name>
            <url>http://repo.ohdsi.org:8085/nexus/content/repositories/releases</url>
        </repository>
        <repository>
            <id>ohdsi.thirdparty</id>
            <name>repo.ohdsi.org</name>
            <url>http://repo.ohdsi.org:8085/nexus/content/repositories/thirdparty</url>
        </repository>
        <repository>
            <id>ohdsi.snapshots</id>
            <name>repo.ohdsi.org-snapshots</name>
            <url>http://repo.ohdsi.org:8085/nexus/content/repositories/snapshots</url>
            <releases>
                <enabled>false</enabled>
            </releases>
            <snapshots>
                <enabled>true</enabled>
            </snapshots>
        </repository>
    </repositories>

    <distributionManagement>
        <snapshotRepository>
            <id>community-libs-snapshot-local</id>
            <name>community-libs-snapshot-local</name>
            <url>https://nexus.odysseusinc.com/repository/community-libs-snapshot-local</url>
        </snapshotRepository>
        <repository>
            <id>community-libs-release-local</id>
            <name>community-libs-release-local</name>
            <url>https://nexus.odysseusinc.com/repository/community-libs-release-local</url>
        </repository>
    </distributionManagement>

</project>