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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 942 459

  2. Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 236 75

  3. Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 281 140

  4. Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 32

  5. CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 85 62

  6. PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 191 90

Repositories

Showing 10 of 323 repositories
  • PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 191 90 24 (1 issue needs help) 4 Updated Apr 12, 2025
  • WhiteRabbit Public

    WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

    Java 188 Apache-2.0 93 108 (3 issues need help) 6 Updated Apr 12, 2025
  • Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 32 20 1 Updated Apr 12, 2025
  • EvidenceSynthesis Public

    An R package for combining evidence from multiple sources (e.g. multiple data sites)

    R 8 8 3 (1 issue needs help) 0 Updated Apr 12, 2025
  • OmopViewer Public
    R 3 Apache-2.0 0 17 0 Updated Apr 11, 2025
  • CohortDiagnostics Public

    An R package for performing various cohort diagnostics.

    R 44 51 35 (1 issue needs help) 2 Updated Apr 11, 2025
  • ClinicalCharacteristics Public

    [under development] table shell approach to OMOP characterization

    R 1 Apache-2.0 2 14 0 Updated Apr 11, 2025
  • OhdsiShinyModules Public

    An R package containing Shiny modules used by various OHDSI Shiny apps

    R 8 11 64 (1 issue needs help) 4 Updated Apr 11, 2025
  • OmopSketch Public
    R 3 Apache-2.0 0 11 6 Updated Apr 11, 2025
  • webapi-shiny Public

    [Under development] Holds dependencies for WebAPI Shiny apps

    R 1 Apache-2.0 0 0 0 Updated Apr 11, 2025
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