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@OHDSI Observational Health Data Sciences and Informatics

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    304 repositories

    • Strategus

      Public
      [Under development] An R packages for coordinating and executing analytics using HADES modules
      R
      •11•7•16•2•Updated Oct 2, 2024Oct 2, 2024

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•216•213•18•Updated Oct 2, 2024Oct 2, 2024

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •166•128•134•20•Updated Oct 2, 2024Oct 2, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •136•266•214•15•Updated Oct 2, 2024Oct 2, 2024

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •88•187•69•1•Updated Oct 2, 2024Oct 2, 2024

    • TxPathways

      Public
      [under development] OHDSI tool to build treatment history of population and derive summary statistics of patterns of treatment
      R
      •
      Apache License 2.0
      •2•0•2•1•Updated Oct 2, 2024Oct 2, 2024

    • CohortDiagnostics

      Public
      An R package for performing various cohort diagnostics.
      hades
      R
      •48•41•24•3•Updated Oct 2, 2024Oct 2, 2024

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •5•12•40•2•Updated Oct 2, 2024Oct 2, 2024

    • OhdsiShinyModules

      Public
      An R package containing Shiny modules used by various OHDSI Shiny apps
      R
      •11•8•52•6•Updated Oct 2, 2024Oct 2, 2024

    • CohortGenerator

      Public
      Cohort Generation for the OMOP Common Data Model
      hades
      R
      •10•11•18•2•Updated Oct 2, 2024Oct 2, 2024

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•22•4•Updated Oct 2, 2024Oct 2, 2024

    • Hades

      Public
      Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.
      hades
      R
      •
      Apache License 2.0
      •12•23•15•5•Updated Oct 2, 2024Oct 2, 2024

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Oct 2, 2024Oct 2, 2024

    • PhenotypeLibrary

      Public
      A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohdsi-phenotype-library-announcements/16910
      hades
      R
      •
      Other
      •16•40•4•0•Updated Oct 2, 2024Oct 2, 2024

    • ImageWG

      Public
      Repository for medical image working group
      Rich Text Format
      •
      Apache License 2.0
      •4•8•4•0•Updated Oct 2, 2024Oct 2, 2024

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      Java
      •8•8•4•1•Updated Oct 2, 2024Oct 2, 2024

    • phenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•1•10•0•Updated Oct 2, 2024Oct 2, 2024

    • Bouzyges

      Public
      Python
      •1•3•0•0•Updated Oct 2, 2024Oct 2, 2024

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•10•0•Updated Oct 2, 2024Oct 2, 2024

    • ShinyDeploy

      Public
      Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.
      R
      •38•27•7•2•Updated Oct 2, 2024Oct 2, 2024

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •2•10•13•3•Updated Oct 1, 2024Oct 1, 2024

    • CommonDataModel

      Public
      Definition and DDLs for the OMOP Common Data Model (CDM)
      HTML
      •450•878•86•12•Updated Oct 1, 2024Oct 1, 2024

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•38•2•Updated Oct 1, 2024Oct 1, 2024

    • PatientLevelPredictionValidationModule

      Public
      A module for validating prediction models
      R
      •1•0•0•1•Updated Oct 1, 2024Oct 1, 2024

    • EmpiricalCalibration

      Public
      An R package for performing empirical calibration of observational study estimates
      hades
      R
      •9•10•2•0•Updated Oct 1, 2024Oct 1, 2024

    • ReportGenerator

      Public
      A package that creates friendly report from results saved in an OHDSI standardized result database
      R
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • ConceptSetDiagnostics

      Public
      Package to assist with design diagnostics for concept set
      R
      •
      Other
      •1•0•1•0•Updated Sep 30, 2024Sep 30, 2024

    • SqlRender

      Public
      This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
      hades
      R
      •
      Other
      •77•81•11•0•Updated Sep 30, 2024Sep 30, 2024

    • CohortMethod

      Public
      An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
      hades
      R
      •57•82•17•1•Updated Sep 30, 2024Sep 30, 2024

    • GIS

      Public
      R
      •
      Apache License 2.0
      •9•9•142•2•Updated Sep 30, 2024Sep 30, 2024