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NEWS.md

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CohortGeneratorModule 0.4.2

  • Adding aws.s3 and dependencies to renv.lock for bulk upload to RedShift.

CohortGeneratorModule 0.4.1

  • Update execute() to set options(readr.num_threads=1) to prevent hanging when reading/writing incremental csv files.

CohortGeneratorModule 0.4.0

  • Update to use CohortGenerator v0.9.0
  • Add DuckDB to renv.lock

CohortGeneratorModule 0.3.0

  • Using renv project profiles to manage core packages required for module execution vs. those that are needed for development purposes.

CohortGeneratorModule 0.2.1

  • Update to use CohortGenerator v0.8.1

CohortGeneratorModule 0.2.0

  • Updated module to use HADES wide lock file and updated to use renv v1.0.2
  • Added functions and tests for creating the results data model for use by Strategus upload functionality
  • Added additional GitHub Action tests to unit test the module functionality on HADES supported R version (v4.2.3) and the latest release of R

CohortGeneratorModule 0.1.1

Bump dependencies and add keyring, Strategus as dependencies Bug fixes for Google BigQuery - thanks @ablack3

CohortGeneratorModule 0.1.0

  • Use CohortGenerator v0.8.0 to support cohort subsets

CohortGeneratorModule 0.0.16-1

  • Bump CohortGenerator to develop branch to test subset functionality
  • Bump DatabaseConnector & SqlRender to fix #15

CohortGeneratorModule 0.0.16

  • Make inclusion rule description optional (#14)

CohortGeneratorModule 0.0.15

  • Add explicit reference to aws.s3 to renv.lock file

CohortGeneratorModule 0.0.14

  • Updated referenced to CirceR v1.2.1

CohortGeneratorModule 0.0.13

  • Using released version of CohortGenerator v0.7.0

CohortGeneratorModule 0.0.12

  • Using preview version of CohortGenerator v0.7.0

CohortGeneratorModule 0.0.11

  • Update code to ensure inclusion rule names are included.
  • Upgrade to use CohortGenerator v0.6.0

CohortGeneratorModule 0.0.10

  • Update resultsDataModelSpecification.csv to use database_id as varchar
  • Bug fix: json and sqlCommand were swapped

CohortGeneratorModule 0.0.9

  • Use DatabaseConnector v5.0.4
  • Update resultsDataModelSpecification.csv to use database_id as bigint and to use new format for OhdsiSharing

CohortGeneratorModule 0.0.8

Fix auto-generated SettingsFunction.R to use proper function name createCohortGeneratorModuleSpecifications

CohortGeneratorModule 0.0.7

Using an experimental version of DatabaseConnector

CohortGeneratorModule 0.0.6

Adding cohort_definition information to the output and adding unit tests to ensure all renv dependencies are available across platforms.

CohortGeneratorModule 0.0.5

Fixing bug with renv.lock file which had an incorrect reference to the CohortGenerator package.

CohortGeneratorModule 0.0.4

Fixing bug with to use jobContext$moduleExecutionSettings$databaseId for the databaseId in the results. This value will be set by Strategus.

CohortGeneratorModule 0.0.3

Fixing bug with cohort_generation.csv which was not written in snake_case format.

CohortGeneratorModule 0.0.2

Using released version of CohortGenerator v0.5.0 and adding CreateModules.Rmd to help guide development of new modules.

CohortGeneratorModule 0.0.1

Initial version