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Update images to in line with actual outputs and remove redundant note
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mb2055 committed Jan 20, 2025
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8 changes: 0 additions & 8 deletions doc/source/tutorial/part06/02_alchemical_dynamics.rst
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Expand Up @@ -340,14 +340,6 @@ from an ``initial`` value of 2.0 to a ``final`` value of 3.0 via
:alt: View of the λ-schedule that sandwiches a standard morph stage
between two stages that scale the charge lever.

.. note::

Schedules constructed outside of the dynamics simulation do not have
the full set of levers (e.g. torsion_k, dih_scale etc) as
levers are only added as they are needed (hence why only
``default`` and ``charge`` are shown here). The additional levers
are added when the schedule is added to the simulation.

Once you have created your schedule you can add it via the
:meth:`~sire.mol.Dynamics.set_schedule` function of the
:class:`~sire.mol.Dynamics` object, e.g.
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