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chore(deps): bump the pipenv group across 1 directory with 9 updates #3091

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@dependabot dependabot bot commented on behalf of github Jul 1, 2024

Bumps the pipenv group with 9 updates in the /services/datalad directory:

Package From To
redis 5.0.4 5.0.7
requests 2.32.0 2.32.3
elastic-apm 6.22.0 6.22.3
boto3 1.34.95 1.34.136
elasticsearch 8.13.0 8.14.0
pygit2 1.14.1 1.15.0
datalad 1.0.2 1.1.0
pytest 8.2.0 8.2.2
coverage 7.5.0 7.5.4

Updates redis from 5.0.4 to 5.0.7

Release notes

Sourced from redis's releases.

5.0.7

Changes

🐛 Bug Fixes

  • None UnixDomainSocket timeout (#3293)

🧰 Maintenance

  • Updated redis version to represent latest available build (#3296)

Contributors

We'd like to thank all the contributors who worked on this release!

@​vladvildanov @​dmaier-redislabs

5.0.6

Changes

🐛 Bug Fixes

  • Handle lists in the response of INFO

5.0.5

Changes

🐛 Bug Fixes

  • Fix parsing of INFO response (#3265)
Commits

Updates requests from 2.32.0 to 2.32.3

Release notes

Sourced from requests's releases.

v2.32.3

2.32.3 (2024-05-29)

Bugfixes

  • Fixed bug breaking the ability to specify custom SSLContexts in sub-classes of HTTPAdapter. (#6716)
  • Fixed issue where Requests started failing to run on Python versions compiled without the ssl module. (#6724)

v2.32.2

2.32.2 (2024-05-21)

Deprecations

  • To provide a more stable migration for custom HTTPAdapters impacted by the CVE changes in 2.32.0, we've renamed _get_connection to a new public API, get_connection_with_tls_context. Existing custom HTTPAdapters will need to migrate their code to use this new API. get_connection is considered deprecated in all versions of Requests>=2.32.0.

    A minimal (2-line) example has been provided in the linked PR to ease migration, but we strongly urge users to evaluate if their custom adapter is subject to the same issue described in CVE-2024-35195. (#6710)

v2.32.1

2.32.1 (2024-05-20)

Bugfixes

  • Add missing test certs to the sdist distributed on PyPI.
Changelog

Sourced from requests's changelog.

2.32.3 (2024-05-29)

Bugfixes

  • Fixed bug breaking the ability to specify custom SSLContexts in sub-classes of HTTPAdapter. (#6716)
  • Fixed issue where Requests started failing to run on Python versions compiled without the ssl module. (#6724)

2.32.2 (2024-05-21)

Deprecations

  • To provide a more stable migration for custom HTTPAdapters impacted by the CVE changes in 2.32.0, we've renamed _get_connection to a new public API, get_connection_with_tls_context. Existing custom HTTPAdapters will need to migrate their code to use this new API. get_connection is considered deprecated in all versions of Requests>=2.32.0.

    A minimal (2-line) example has been provided in the linked PR to ease migration, but we strongly urge users to evaluate if their custom adapter is subject to the same issue described in CVE-2024-35195. (#6710)

2.32.1 (2024-05-20)

Bugfixes

  • Add missing test certs to the sdist distributed on PyPI.
Commits
  • 0e322af v2.32.3
  • e188799 Don't create default SSLContext if ssl module isn't present (#6724)
  • 145b539 Merge pull request #6716 from sigmavirus24/bug/6715
  • b1d73dd Don't use default SSLContext with custom poolmanager kwargs
  • 6badbac Update HISTORY.md
  • a62a2d3 Allow for overriding of specific pool key params
  • 88dce9d v2.32.2
  • c98e4d1 Merge pull request #6710 from nateprewitt/api_rename
  • 92075b3 Add deprecation warning
  • aa1461b Move _get_connection to get_connection_with_tls_context
  • Additional commits viewable in compare view

Updates elastic-apm from 6.22.0 to 6.22.3

Release notes

Sourced from elastic-apm's releases.

v6.22.3

Elastic APM Python agent layer ARNs

Bug fixes

  • Fix outcome in ASGI and Starlette apps on error status codes without an exception #2060

Full Changelog: elastic/apm-agent-python@v6.22.2...v6.22.3

v6.22.2

Elastic APM Python agent layer ARNs

Bug fixes

  • Fix CI release workflow #2046

... (truncated)

Changelog

Sourced from elastic-apm's changelog.

==== 6.22.3 - 2024-06-10

[float] ===== Bug fixes

  • Fix outcome in ASGI and Starlette apps on error status codes without an exception {pull}2060#2060

[[release-notes-6.22.2]] ==== 6.22.2 - 2024-05-20

[float] ===== Bug fixes

  • Fix CI release workflow {pull}2046#2046

[[release-notes-6.22.1]] ==== 6.22.1 - 2024-05-17

[float] ===== Features

  • Relax wrapt dependency to only exclude 1.15.0 {pull}2005#2005

[[release-notes-6.22.0]]

Commits
  • a0d334f update CHANGELOG and bump version to 6.22.3 (#2062)
  • 30e474d contrib/starlette: fix outcome for 500 responses without exception (#2060)
  • b6b673c build(deps): bump the github-actions group with 2 updates (#2061)
  • 6a37538 feat(slack-bot): use github secrets (#2058)
  • cab134b github-action: run buildkite action with GH secrets (#2057)
  • fb9b40d github-actions: remove snapshoty (#2059)
  • 1704ee5 github: use docker github secrets (#2054)
  • 8ac4864 build(deps): bump certifi from 2024.2.2 to 2024.6.2 in /dev-utils (#2055)
  • d37cb20 ci: use updatecli with GitHub secrets (#2053)
  • cbaa31e build(deps): bump actions/attest-build-provenance (#2052)
  • Additional commits viewable in compare view

Updates boto3 from 1.34.95 to 1.34.136

Commits
  • 04045c4 Merge branch 'release-1.34.136'
  • c04875b Bumping version to 1.34.136
  • 5df3444 Add changelog entries from botocore
  • dcfb592 Merge pull request #4182 from kdaily/kdaily-remove-opsworks-collections-integ...
  • acbe904 Do not test opsworks collections
  • 359f0b2 Merge branch 'release-1.34.135'
  • 54246d5 Merge branch 'release-1.34.135' into develop
  • d9b5ce7 Bumping version to 1.34.135
  • 857c461 Add changelog entries from botocore
  • 6221a41 Merge branch 'release-1.34.134' into develop
  • Additional commits viewable in compare view

Updates elasticsearch from 8.13.0 to 8.14.0

Release notes

Sourced from elasticsearch's releases.

8.14.0

  • Fixed node_pool_class override (#2581, contributed by @​tallakh)
  • Added retriever to the Search API
  • Added deprecated and removed allow_auto_create from the Create or update component template API
  • Added allow_auto_create, cause, deprecated, ignore_missing_component_templates and master_timeout to the Create or update index template API
  • Added cause, removed flat_settings and timeout from the Create or update index template legacy API
  • Removed various unsupported parameters from the Simulate index API
  • Added various supported paramters to the Simulate index template API
  • Added the completion and rerank task types to the Inference APIs
  • Added the query and timeout parameters to the Perform inference API
  • Added typed_keys to the Search Application Search API
  • Added with_profile_uid to the Get API key information and Query API key information APIs

8.13.2

  • Added the ml.update_trained_model_deployment API
  • Marked Requests 2.32.2 as incompatible with the Elasticsearch client

8.13.1

  • Added force_synthetic_source to the Get API
  • Added wait_for_completion to the Create trained model API
  • Added typed_keys to the Query API key information API
Commits

Updates pygit2 from 1.14.1 to 1.15.0

Changelog

Sourced from pygit2's changelog.

1.15.0 (2024-05-18)

  • Many deprecated features have been removed, see below

  • Upgrade to libgit2 v1.8.1

  • New push_options optional argument in Repository.push(...) #1282

  • New support comparison of Oid with text string

  • Fix CheckoutNotify.IGNORED #1288

  • Use default error handler when decoding/encoding paths #537

  • Remove setuptools runtime dependency #1281

  • Coding style with ruff #1280

  • Add wheels for ppc64le #1279

  • Fix tests on EPEL8 builds for s390x #1283

Deprecations:

  • Deprecate IndexEntry.hex, use str(IndexEntry.id)

Breaking changes:

  • Remove deprecated oid.hex, use str(oid)

  • Remove deprecated object.hex, use str(object.id)

  • Remove deprecated object.oid, use object.id

  • Remove deprecated Repository.add_submodule(...), use Repository.submodules.add(...)

  • Remove deprecated Repository.lookup_submodule(...), use Repository.submodules[...]

  • Remove deprecated Repository.init_submodules(...), use Repository.submodules.init(...)

  • Remove deprecated Repository.update_submodule(...), use Repository.submodules.update(...)

  • Remove deprecated constants GIT_OBJ_XXX, use ObjectType

  • Remove deprecated constants GIT_REVPARSE_XXX, use RevSpecFlag

  • Remove deprecated constants GIT_REF_XXX, use ReferenceType

  • Remove deprecated ReferenceType.OID, use instead ReferenceType.DIRECT

  • Remove deprecated ReferenceType.LISTALL, use instead ReferenceType.ALL

... (truncated)

Commits
  • facaf22 Release 1.15.0
  • 0fca184 CI use macos-12
  • dabd40c Update to libgit2 1.8.1
  • 31ea782 Update to libgit2 1.8.1
  • b248587 Fix CheckoutNotify.IGNORED
  • 00b04be Remove unused code
  • 31aea66 Remove usage of deprecated Py_FileSystemDefaultEncoding
  • ea97961 Removing usage of deprecated Py_FileSystemDefaultEncoding
  • 730414b Remove deprecated Object.oid
  • d71f980 Deprecate IndexEntry.hex
  • Additional commits viewable in compare view

Updates datalad from 1.0.2 to 1.1.0

Release notes

Sourced from datalad's releases.

1.1.0

🔩 Dependencies

🏠 Internal

  • Retry logic for S3 connections is now handed over to Boto3 and its standard mode, removing our custom method. [PR #7340](datalad/datalad#7340)

1.0.3

🐛 Bug Fixes

🏠 Internal

🧪 Tests

Changelog

Sourced from datalad's changelog.

1.1.0 (2024-06-06)

🔩 Dependencies

🏠 Internal

  • Retry logic for S3 connections is now handed over to Boto3 and its standard mode, removing our custom method. [PR #7340](datalad/datalad#7340)

1.0.3 (2024-06-06)

🐛 Bug Fixes

🏠 Internal

🧪 Tests

Commits
  • 982cca5 [skip ci] Update docs/source/changelog.rst and CITATION.cff
  • cb713f2 [skip ci] Update CHANGELOG
  • 39d95ae Merge tag '1.0.3'
  • c88b0a6 [skip ci] Update docs/source/changelog.rst and CITATION.cff
  • dfc1093 [skip ci] Update CHANGELOG
  • 60b3a58 Merge pull request #7613 from datalad/contributors/update-2024-06-06
  • 614511e Automated deployment to update contributors 2024-06-06
  • 4c7e73d Merge pull request #7575 from effigies/boto
  • 39fe898 Merge pull request #7610 from yarikoptic/enh-codespell
  • 4295dd0 TEST: Casette-ify the anonymous S3 test
  • Additional commits viewable in compare view

Updates pytest from 8.2.0 to 8.2.2

Release notes

Sourced from pytest's releases.

8.2.2

pytest 8.2.2 (2024-06-04)

Bug Fixes

  • #12355: Fix possible catastrophic performance slowdown on a certain parametrization pattern involving many higher-scoped parameters.
  • #12367: Fix a regression in pytest 8.2.0 where unittest class instances (a fresh one is created for each test) were not released promptly on test teardown but only on session teardown.
  • #12381: Fix possible "Directory not empty" crashes arising from concurent cache dir (.pytest_cache) creation. Regressed in pytest 8.2.0.

Improved Documentation

  • #12290: Updated Sphinx theme to use Furo instead of Flask, enabling Dark mode theme.
  • #12356: Added a subsection to the documentation for debugging flaky tests to mention lack of thread safety in pytest as a possible source of flakyness.
  • #12363: The documentation webpages now links to a canonical version to reduce outdated documentation in search engine results.

8.2.1

pytest 8.2.1 (2024-05-19)

Improvements

  • #12334: Support for Python 3.13 (beta1 at the time of writing).

Bug Fixes

  • #12120: Fix [PermissionError]{.title-ref} crashes arising from directories which are not selected on the command-line.
  • #12191: Keyboard interrupts and system exits are now properly handled during the test collection.
  • #12300: Fixed handling of 'Function not implemented' error under squashfuse_ll, which is a different way to say that the mountpoint is read-only.
  • #12308: Fix a regression in pytest 8.2.0 where the permissions of automatically-created .pytest_cache directories became rwx------ instead of the expected rwxr-xr-x.

Trivial/Internal Changes

  • #12333: pytest releases are now attested using the recent Artifact Attestation support from GitHub, allowing users to verify the provenance of pytest's sdist and wheel artifacts.
Commits
  • 329d371 Prepare release version 8.2.2
  • 214d098 Merge pull request #12414 from bluetech/backport-12409
  • 153a436 [8.2.x] fixtures: fix catastrophic performance problem in reorder_items
  • b41d5a5 Merge pull request #12412 from pytest-dev/backport-12408-to-8.2.x
  • 9bb73d7 [8.2.x] cacheprovider: fix "Directory not empty" crash from cache directory c...
  • 4569a01 [8.2.x] doc: Update trainings/events (#12402)
  • 1d103e5 [8.2.x] Clarify pytest_ignore_collect docs (#12386)
  • 240a252 [8.2.x] Add html_baseurl to sphinx conf.py (#12372)
  • a5ee3c4 Merge pull request #12370 from pytest-dev/backport-12368-to-8.2.x
  • f7358ae [8.2.x] unittest: fix class instances no longer released on test teardown sin...
  • Additional commits viewable in compare view

Updates coverage from 7.5.0 to 7.5.4

Changelog

Sourced from coverage's changelog.

Version 7.5.4 — 2024-06-22

  • If you attempt to combine statement coverage data with branch coverage data, coverage.py used to fail with the message "Can't combine arc data with line data" or its reverse, "Can't combine line data with arc data." These messages used internal terminology, making it hard for people to understand the problem. They are now changed to mention "branch coverage data" and "statement coverage data."

  • Fixed a minor branch coverage problem with wildcard match/case cases using names or guard clauses.

  • Started testing on 3.13 free-threading (nogil) builds of Python. I'm not claiming full support yet. Closes issue 1799_.

.. _issue 1799: nedbat/coveragepy#1799

.. _changes_7-5-3:

Version 7.5.3 — 2024-05-28

  • Performance improvements for combining data files, especially when measuring line coverage. A few different quadratic behaviors were eliminated. In one extreme case of combining 700+ data files, the time dropped from more than three hours to seven minutes. Thanks for Kraken Tech for funding the fix.

  • Performance improvements for generating HTML reports, with a side benefit of reducing memory use, closing issue 1791_. Thanks to Daniel Diniz for helping to diagnose the problem.

.. _issue 1791: nedbat/coveragepy#1791

.. _changes_7-5-2:

Version 7.5.2 — 2024-05-24

  • Fix: nested matches of exclude patterns could exclude too much code, as reported in issue 1779_. This is now fixed.

  • Changed: previously, coverage.py would consider a module docstring to be an executable statement if it appeared after line 1 in the file, but not executable if it was the first line. Now module docstrings are never counted as executable statements. This can change coverage.py's count of the number of statements in a file, which can slightly change the coverage percentage reported.

... (truncated)

Commits
  • 22c09c6 docs: sample HTML for 7.5.4
  • 9e16381 docs: prep for 7.5.4
  • fba9b9e docs: link issue 1799 from the changelog
  • f124de8 build: no longer download kits to upload them
  • 9516cf6 build: hash-pin all actions
  • c6e0985 build: finish up the publish action
  • 4a49458 build: get the latest dist run id for publishing
  • fb15efa build: pin hashes for publishing actions
  • c20af95 build: use the correct item: github.event.action
  • ccbab15 build: dump all the github actions data
  • Additional commits viewable in compare view

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Bumps the pipenv group with 9 updates in the /services/datalad directory:

| Package | From | To |
| --- | --- | --- |
| [redis](https://github.com/redis/redis-py) | `5.0.4` | `5.0.7` |
| [requests](https://github.com/psf/requests) | `2.32.0` | `2.32.3` |
| [elastic-apm](https://github.com/elastic/apm-agent-python) | `6.22.0` | `6.22.3` |
| [boto3](https://github.com/boto/boto3) | `1.34.95` | `1.34.136` |
| [elasticsearch](https://github.com/elastic/elasticsearch-py) | `8.13.0` | `8.14.0` |
| [pygit2](https://github.com/libgit2/pygit2) | `1.14.1` | `1.15.0` |
| [datalad](https://github.com/datalad/datalad) | `1.0.2` | `1.1.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.2.0` | `8.2.2` |
| [coverage](https://github.com/nedbat/coveragepy) | `7.5.0` | `7.5.4` |



Updates `redis` from 5.0.4 to 5.0.7
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.4...v5.0.7)

Updates `requests` from 2.32.0 to 2.32.3
- [Release notes](https://github.com/psf/requests/releases)
- [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md)
- [Commits](psf/requests@v2.32.0...v2.32.3)

Updates `elastic-apm` from 6.22.0 to 6.22.3
- [Release notes](https://github.com/elastic/apm-agent-python/releases)
- [Changelog](https://github.com/elastic/apm-agent-python/blob/main/CHANGELOG.asciidoc)
- [Commits](elastic/apm-agent-python@v6.22.0...v6.22.3)

Updates `boto3` from 1.34.95 to 1.34.136
- [Release notes](https://github.com/boto/boto3/releases)
- [Commits](boto/boto3@1.34.95...1.34.136)

Updates `elasticsearch` from 8.13.0 to 8.14.0
- [Release notes](https://github.com/elastic/elasticsearch-py/releases)
- [Commits](elastic/elasticsearch-py@v8.13.0...v8.14.0)

Updates `pygit2` from 1.14.1 to 1.15.0
- [Changelog](https://github.com/libgit2/pygit2/blob/master/CHANGELOG.md)
- [Commits](libgit2/pygit2@v1.14.1...v1.15.0)

Updates `datalad` from 1.0.2 to 1.1.0
- [Release notes](https://github.com/datalad/datalad/releases)
- [Changelog](https://github.com/datalad/datalad/blob/maint/CHANGELOG.md)
- [Commits](datalad/datalad@1.0.2...1.1.0)

Updates `pytest` from 8.2.0 to 8.2.2
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.2.0...8.2.2)

Updates `coverage` from 7.5.0 to 7.5.4
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.5.0...7.5.4)

---
updated-dependencies:
- dependency-name: redis
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pipenv
- dependency-name: requests
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pipenv
- dependency-name: elastic-apm
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pipenv
- dependency-name: boto3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pipenv
- dependency-name: elasticsearch
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pipenv
- dependency-name: pygit2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pipenv
- dependency-name: datalad
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pipenv
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pipenv
- dependency-name: coverage
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pipenv
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jul 1, 2024
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codecov bot commented Jul 1, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 41.01%. Comparing base (f3a1dc7) to head (4d03420).

Additional details and impacted files
@@            Coverage Diff             @@
##           master    #3091      +/-   ##
==========================================
- Coverage   42.36%   41.01%   -1.35%     
==========================================
  Files         595      552      -43     
  Lines       37919    36311    -1608     
  Branches     1096     1096              
==========================================
- Hits        16063    14892    -1171     
+ Misses      21644    21207     -437     
  Partials      212      212              

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dependabot bot commented on behalf of github Aug 1, 2024

Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot bot closed this Aug 1, 2024
@dependabot dependabot bot deleted the dependabot/pip/services/datalad/pipenv-b4631069fb branch August 1, 2024 13:13
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