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Update assembly resources #23

Merged
merged 19 commits into from
Jul 18, 2024
Merged

Update assembly resources #23

merged 19 commits into from
Jul 18, 2024

Commits on May 29, 2024

  1. fix: linking to abs path not real, fix metamorph import

    @rroutsong
    rroutsong committed May 29, 2024
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  2. fix: update docker image and assembly resource profile

    @rroutsong
    rroutsong committed May 29, 2024
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Commits on Jun 5, 2024

  1. fix: tweaking resource allocations based on performance of jobs

    @rroutsong
    rroutsong committed Jun 5, 2024
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  2. Merge branch 'main' into update_assembly_resources

    @rroutsong
    rroutsong committed Jun 5, 2024
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Commits on Jun 6, 2024

  1. feat: update metamorph image

    @rroutsong
    rroutsong committed Jun 6, 2024
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Commits on Jun 12, 2024

  1. fix: tweak rna humann resource allocation

    @rroutsong
    rroutsong committed Jun 12, 2024
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  2. fix: remove nproc flag from humann-metaphlan directive

    @rroutsong
    rroutsong committed Jun 12, 2024
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Commits on Jun 14, 2024

  1. fix: allow for no delimter sample sheet, simple delimter detection

    @rroutsong
    rroutsong committed Jun 14, 2024
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  2. fix: update to new spades container

    @rroutsong
    rroutsong committed Jun 14, 2024
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  3. fix: noop snakemake inputs for dna-only mode

    @rroutsong
    rroutsong committed Jun 14, 2024
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Commits on Jul 9, 2024

  1. Merge branch 'update_assembly_resources' of https://github.com/OpenOm… 

    …ics/metamorph into update_assembly_resources
    @rroutsong
    rroutsong committed Jul 9, 2024
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Commits on Jul 10, 2024

  1. fix: update binning resources and use temp dir pattern for binning step

    @rroutsong
    rroutsong committed Jul 10, 2024
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Commits on Jul 11, 2024

  1. fix: clone CAT from fork

    @rroutsong
    rroutsong committed Jul 11, 2024
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  2. fix: update CAT to use fork

    @rroutsong
    rroutsong committed Jul 11, 2024
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Commits on Jul 17, 2024

  1. fix: update to newest CAT db+tax

    @rroutsong
    rroutsong committed Jul 17, 2024
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  2. fix: account for blank RNA column

    @rroutsong
    rroutsong committed Jul 17, 2024
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  3. feat: add testing for multiple execution modes

    @rroutsong
    rroutsong committed Jul 17, 2024
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  4. fix: remove trace

    @rroutsong
    rroutsong committed Jul 17, 2024
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Commits on Jul 18, 2024

  1. fix: correct pathing on statistics rules

    @rroutsong
    rroutsong committed Jul 18, 2024
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