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@@ -2,12 +2,17 @@ Package: REDCapLintR | |
Title: Tool for REDCap Dictionary Good Practices | ||
Version: 0.0.0.9000 | ||
Authors@R: | ||
c(person("Will", "Beasley", role = c("aut", "cre"), email = | ||
"[email protected]", comment = c(ORCID = "0000-0002-5613-5006"))) | ||
Description: | ||
It examines a REDCap project's dictionary to identifies | ||
and reports potential problems. | ||
person("Will", "Beasley", , "[email protected]", role = c("aut", "cre"), | ||
comment = c(ORCID = "0000-0002-5613-5006")) | ||
Description: It examines a REDCap project's dictionary to identifies and | ||
reports potential problems. | ||
License: MIT + file LICENSE | ||
Encoding: UTF-8 | ||
Roxygen: list(markdown = TRUE) | ||
RoxygenNote: 7.3.2 | ||
Imports: | ||
cli, | ||
glue, | ||
lifecycle, | ||
rlang, | ||
withr |
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# Generated by roxygen2: do not edit by hand | ||
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import(rlang) | ||
importFrom(glue,glue) | ||
importFrom(lifecycle,deprecated) |
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#' @keywords internal | ||
"_PACKAGE" | ||
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## usethis namespace: start | ||
#' @import rlang | ||
#' @importFrom glue glue | ||
#' @importFrom lifecycle deprecated | ||
## usethis namespace: end | ||
NULL |
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# Standalone file: do not edit by hand | ||
# Source: https://github.com/r-lib/rlang/blob/HEAD/R/standalone-purrr.R | ||
# Generated by: usethis::use_standalone("r-lib/rlang", "purrr") | ||
# ---------------------------------------------------------------------- | ||
# | ||
# --- | ||
# repo: r-lib/rlang | ||
# file: standalone-purrr.R | ||
# last-updated: 2023-02-23 | ||
# license: https://unlicense.org | ||
# imports: rlang | ||
# --- | ||
# | ||
# This file provides a minimal shim to provide a purrr-like API on top of | ||
# base R functions. They are not drop-in replacements but allow a similar style | ||
# of programming. | ||
# | ||
# ## Changelog | ||
# | ||
# 2023-02-23: | ||
# * Added `list_c()` | ||
# | ||
# 2022-06-07: | ||
# * `transpose()` is now more consistent with purrr when inner names | ||
# are not congruent (#1346). | ||
# | ||
# 2021-12-15: | ||
# * `transpose()` now supports empty lists. | ||
# | ||
# 2021-05-21: | ||
# * Fixed "object `x` not found" error in `imap()` (@mgirlich) | ||
# | ||
# 2020-04-14: | ||
# * Removed `pluck*()` functions | ||
# * Removed `*_cpl()` functions | ||
# * Used `as_function()` to allow use of `~` | ||
# * Used `.` prefix for helpers | ||
# | ||
# nocov start | ||
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map <- function(.x, .f, ...) { | ||
.f <- as_function(.f, env = global_env()) | ||
lapply(.x, .f, ...) | ||
} | ||
walk <- function(.x, .f, ...) { | ||
map(.x, .f, ...) | ||
invisible(.x) | ||
} | ||
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map_lgl <- function(.x, .f, ...) { | ||
.rlang_purrr_map_mold(.x, .f, logical(1), ...) | ||
} | ||
map_int <- function(.x, .f, ...) { | ||
.rlang_purrr_map_mold(.x, .f, integer(1), ...) | ||
} | ||
map_dbl <- function(.x, .f, ...) { | ||
.rlang_purrr_map_mold(.x, .f, double(1), ...) | ||
} | ||
map_chr <- function(.x, .f, ...) { | ||
.rlang_purrr_map_mold(.x, .f, character(1), ...) | ||
} | ||
.rlang_purrr_map_mold <- function(.x, .f, .mold, ...) { | ||
.f <- as_function(.f, env = global_env()) | ||
out <- vapply(.x, .f, .mold, ..., USE.NAMES = FALSE) | ||
names(out) <- names(.x) | ||
out | ||
} | ||
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map2 <- function(.x, .y, .f, ...) { | ||
.f <- as_function(.f, env = global_env()) | ||
out <- mapply(.f, .x, .y, MoreArgs = list(...), SIMPLIFY = FALSE) | ||
if (length(out) == length(.x)) { | ||
set_names(out, names(.x)) | ||
} else { | ||
set_names(out, NULL) | ||
} | ||
} | ||
map2_lgl <- function(.x, .y, .f, ...) { | ||
as.vector(map2(.x, .y, .f, ...), "logical") | ||
} | ||
map2_int <- function(.x, .y, .f, ...) { | ||
as.vector(map2(.x, .y, .f, ...), "integer") | ||
} | ||
map2_dbl <- function(.x, .y, .f, ...) { | ||
as.vector(map2(.x, .y, .f, ...), "double") | ||
} | ||
map2_chr <- function(.x, .y, .f, ...) { | ||
as.vector(map2(.x, .y, .f, ...), "character") | ||
} | ||
imap <- function(.x, .f, ...) { | ||
map2(.x, names(.x) %||% seq_along(.x), .f, ...) | ||
} | ||
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pmap <- function(.l, .f, ...) { | ||
.f <- as.function(.f) | ||
args <- .rlang_purrr_args_recycle(.l) | ||
do.call("mapply", c( | ||
FUN = list(quote(.f)), | ||
args, MoreArgs = quote(list(...)), | ||
SIMPLIFY = FALSE, USE.NAMES = FALSE | ||
)) | ||
} | ||
.rlang_purrr_args_recycle <- function(args) { | ||
lengths <- map_int(args, length) | ||
n <- max(lengths) | ||
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stopifnot(all(lengths == 1L | lengths == n)) | ||
to_recycle <- lengths == 1L | ||
args[to_recycle] <- map(args[to_recycle], function(x) rep.int(x, n)) | ||
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args | ||
} | ||
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keep <- function(.x, .f, ...) { | ||
.x[.rlang_purrr_probe(.x, .f, ...)] | ||
} | ||
discard <- function(.x, .p, ...) { | ||
sel <- .rlang_purrr_probe(.x, .p, ...) | ||
.x[is.na(sel) | !sel] | ||
} | ||
map_if <- function(.x, .p, .f, ...) { | ||
matches <- .rlang_purrr_probe(.x, .p) | ||
.x[matches] <- map(.x[matches], .f, ...) | ||
.x | ||
} | ||
.rlang_purrr_probe <- function(.x, .p, ...) { | ||
if (is_logical(.p)) { | ||
stopifnot(length(.p) == length(.x)) | ||
.p | ||
} else { | ||
.p <- as_function(.p, env = global_env()) | ||
map_lgl(.x, .p, ...) | ||
} | ||
} | ||
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compact <- function(.x) { | ||
Filter(length, .x) | ||
} | ||
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transpose <- function(.l) { | ||
if (!length(.l)) { | ||
return(.l) | ||
} | ||
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inner_names <- names(.l[[1]]) | ||
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if (is.null(inner_names)) { | ||
fields <- seq_along(.l[[1]]) | ||
} else { | ||
fields <- set_names(inner_names) | ||
.l <- map(.l, function(x) { | ||
if (is.null(names(x))) { | ||
set_names(x, inner_names) | ||
} else { | ||
x | ||
} | ||
}) | ||
} | ||
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# This way missing fields are subsetted as `NULL` instead of causing | ||
# an error | ||
.l <- map(.l, as.list) | ||
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map(fields, function(i) { | ||
map(.l, .subset2, i) | ||
}) | ||
} | ||
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every <- function(.x, .p, ...) { | ||
.p <- as_function(.p, env = global_env()) | ||
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for (i in seq_along(.x)) { | ||
if (!rlang::is_true(.p(.x[[i]], ...))) return(FALSE) | ||
} | ||
TRUE | ||
} | ||
some <- function(.x, .p, ...) { | ||
.p <- as_function(.p, env = global_env()) | ||
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for (i in seq_along(.x)) { | ||
if (rlang::is_true(.p(.x[[i]], ...))) return(TRUE) | ||
} | ||
FALSE | ||
} | ||
negate <- function(.p) { | ||
.p <- as_function(.p, env = global_env()) | ||
function(...) !.p(...) | ||
} | ||
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reduce <- function(.x, .f, ..., .init) { | ||
f <- function(x, y) .f(x, y, ...) | ||
Reduce(f, .x, init = .init) | ||
} | ||
reduce_right <- function(.x, .f, ..., .init) { | ||
f <- function(x, y) .f(y, x, ...) | ||
Reduce(f, .x, init = .init, right = TRUE) | ||
} | ||
accumulate <- function(.x, .f, ..., .init) { | ||
f <- function(x, y) .f(x, y, ...) | ||
Reduce(f, .x, init = .init, accumulate = TRUE) | ||
} | ||
accumulate_right <- function(.x, .f, ..., .init) { | ||
f <- function(x, y) .f(y, x, ...) | ||
Reduce(f, .x, init = .init, right = TRUE, accumulate = TRUE) | ||
} | ||
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detect <- function(.x, .f, ..., .right = FALSE, .p = is_true) { | ||
.p <- as_function(.p, env = global_env()) | ||
.f <- as_function(.f, env = global_env()) | ||
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for (i in .rlang_purrr_index(.x, .right)) { | ||
if (.p(.f(.x[[i]], ...))) { | ||
return(.x[[i]]) | ||
} | ||
} | ||
NULL | ||
} | ||
detect_index <- function(.x, .f, ..., .right = FALSE, .p = is_true) { | ||
.p <- as_function(.p, env = global_env()) | ||
.f <- as_function(.f, env = global_env()) | ||
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for (i in .rlang_purrr_index(.x, .right)) { | ||
if (.p(.f(.x[[i]], ...))) { | ||
return(i) | ||
} | ||
} | ||
0L | ||
} | ||
.rlang_purrr_index <- function(x, right = FALSE) { | ||
idx <- seq_along(x) | ||
if (right) { | ||
idx <- rev(idx) | ||
} | ||
idx | ||
} | ||
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list_c <- function(x) { | ||
inject(c(!!!x)) | ||
} | ||
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# nocov end |
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