Merge pull request #535 from OuhscBbmc/dev

trying recheck

.github/workflows/recheck.yml

@@ -0,0 +1,19 @@
+on:
+  workflow_dispatch:
+    inputs:
+      which:
+        type: choice
+        description: Which dependents to check
+        options:
+          - strong
+          - most
+
+name: Reverse dependency check
+
+jobs:
+  revdep_check:
+    name: Reverse check ${{ inputs.which }} dependents
+    uses: r-devel/recheck/.github/workflows/recheck.yml@v1
+    with:
+      which: ${{ inputs.which }}
+      subdirectory: '' #if your package is in a git subdir

.github/workflows/rhub.yaml

@@ -0,0 +1,95 @@
+# R-hub's generic GitHub Actions workflow file. It's canonical location is at
+# https://github.com/r-hub/actions/blob/v1/workflows/rhub.yaml
+# You can update this file to a newer version using the rhub2 package:
+#
+# rhub::rhub_setup()
+#
+# It is unlikely that you need to modify this file manually.
+
+name: R-hub
+run-name: "${{ github.event.inputs.id }}: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }}"
+
+on:
+  workflow_dispatch:
+    inputs:
+      config:
+        description: 'A comma separated list of R-hub platforms to use.'
+        type: string
+        default: 'linux,windows,macos'
+      name:
+        description: 'Run name. You can leave this empty now.'
+        type: string
+      id:
+        description: 'Unique ID. You can leave this empty now.'
+        type: string
+
+jobs:
+
+  setup:
+    runs-on: ubuntu-latest
+    outputs:
+      containers: ${{ steps.rhub-setup.outputs.containers }}
+      platforms: ${{ steps.rhub-setup.outputs.platforms }}
+
+    steps:
+    # NO NEED TO CHECKOUT HERE
+    - uses: r-hub/actions/setup@v1
+      with:
+        config: ${{ github.event.inputs.config }}
+      id: rhub-setup
+
+  linux-containers:
+    needs: setup
+    if: ${{ needs.setup.outputs.containers != '[]' }}
+    runs-on: ubuntu-latest
+    name: ${{ matrix.config.label }}
+    strategy:
+      fail-fast: false
+      matrix:
+        config: ${{ fromJson(needs.setup.outputs.containers) }}
+    container:
+      image: ${{ matrix.config.container }}
+
+    steps:
+      - uses: r-hub/actions/checkout@v1
+      - uses: r-hub/actions/platform-info@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/setup-deps@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/run-check@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+
+  other-platforms:
+    needs: setup
+    if: ${{ needs.setup.outputs.platforms != '[]' }}
+    runs-on: ${{ matrix.config.os }}
+    name: ${{ matrix.config.label }}
+    strategy:
+      fail-fast: false
+      matrix:
+        config: ${{ fromJson(needs.setup.outputs.platforms) }}
+
+    steps:
+      - uses: r-hub/actions/checkout@v1
+      - uses: r-hub/actions/setup-r@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}
+      - uses: r-hub/actions/platform-info@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/setup-deps@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}
+      - uses: r-hub/actions/run-check@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}

DESCRIPTION

@@ -35,7 +35,7 @@ Authors@R: c(person("Will", "Beasley", role = c("aut", "cre"), email =
     comment = c(ORCID = "0000-0002-4690-8343")), person("Matthew", "Schuelke",
     role = "ctb", email="[email protected]",
     comment = c(ORCID = "0000-0001-5755-1725")))
-URL: https://ouhscbbmc.github.io/REDCapR/, https://github.com/OuhscBbmc/REDCapR, https://www.ouhsc.edu/bbmc/, https://project-redcap.org
+URL: https://ouhscbbmc.github.io/REDCapR/, https://github.com/OuhscBbmc/REDCapR, https://www.ouhsc.edu/bbmc/, https://projectredcap.org
 BugReports: https://github.com/OuhscBbmc/REDCapR/issues
 Depends:
     R(>= 3.5.0)

R/retrieve-credential.R

@@ -78,7 +78,7 @@
 #' Follow these steps to adapt to your desired REDCap project(s):
 #' 1. Modify the credential file for the REDCap API with a text editor
 #'    like [Notepad++](https://notepad-plus-plus.org/),
-#'    [Visual Studio Code](https://code.visualstudio.com/), or
+#'    [Visual Studio Code](https://code.visualstudio.com), or
 #'    [nano](https://www.nano-editor.org/).
 #'    Replace existing records with the information from your projects.
 #'    Delete the remaining example records.

cran-comments.md

@@ -8,8 +8,8 @@ Thank you for taking the time to review my submission, and please tell me if the
 Test environments
 -----------------------------------------------
 
-1. Local Ubuntu, R 4.2.2
-2. Local Win11, R 4.3.1 patched
+1. Local Ubuntu, R 4.4.1
+2. Local Win11, R 4.4.1 patched
 3. R-hub
     1. [Ubuntu Linux, R-release, GCC](https://builder.r-hub.io/status/REDCapR_1.1.9005.tar.gz-6f45462d131a4ac49833c0c7c014bad0)
     2. [Fedora Linux, R-devel, clang, gfortran](https://builder.r-hub.io/status/REDCapR_1.1.9005.tar.gz-2e9560e6fcdb4467af8e9ea8d22c165d)

vignettes/TroubleshootingApiCalls.Rmd

@@ -167,7 +167,7 @@ If one of these checks fail, please start by consulting your REDCap administrato
 Common Gotchas  {#gotchas-agnostic}
 ------------------------------------------------------------------
 
-1. **Problems in the project's metadata/dictionary.**  If exporting the metadata fails (*e.g.*, [`REDCapR::redcap_metadata_read()`](https://ouhscbbmc.github.io/REDCapR/reference/redcap_metadata_read.html) and [`redcapAPI::exportMetaData()`](https://rdrr.io/github/nutterb/redcapAPI/man/exportMetaData.html)), manually download the data dictionary from the REDCap browser.  Inspect the plain text closely in a text editor like [Visual Studio Code](https://code.visualstudio.com/); avoid programs like Excel that tend to interpret, align, and decorate the values, which sometimes masks problems.  Scrutinize all elements, but especially look for nonstandard characters.  *See the next bullet.*
+1. **Problems in the project's metadata/dictionary.**  If exporting the metadata fails (*e.g.*, [`REDCapR::redcap_metadata_read()`](https://ouhscbbmc.github.io/REDCapR/reference/redcap_metadata_read.html) and [`redcapAPI::exportMetaData()`](https://www.rdocumentation.org/packages/redcapAPI/versions/2.0/topics/exportMetaData.html)), manually download the data dictionary from the REDCap browser.  Inspect the plain text closely in a text editor like [Visual Studio Code](https://code.visualstudio.com); avoid programs like Excel that tend to interpret, align, and decorate the values, which sometimes masks problems.  Scrutinize all elements, but especially look for nonstandard characters.  *See the next bullet.*
 
     Some API libraries test that problematic elements of a project are handled correctly.  If you encounter an element that causes problems, please consider