starting redcap chapters

ref #9

Co-Authored-By: Thomas <[email protected]>

_bookdown.yml

@@ -27,6 +27,9 @@ rmd_files:
     "ch-workstation.md",
     "ch-tools.md",
     "ch-team.md",
+    "ch-redcap-user.md",
+    "ch-redcap-developer.md",
+    "ch-redcap-admin.md",
 
     # Appendices
     "ch-git.md",

ch-redcap-admin.md

@@ -0,0 +1,2 @@
+Material for REDCap Admins {#redcap-admin}
+====================================

ch-redcap-developer.md

@@ -0,0 +1,3 @@
+Material for REDCap Developers {#redcap-developer}
+====================================
+

ch-redcap-user.md

@@ -0,0 +1,9 @@
+Material for REDCap Users {#redcap-user}
+====================================
+
+Login {#redcap-user-login}
+------------------------------------
+
+Developing Reports {#redcap-user-report-develop}
+------------------------------------
+Please first read [Login](#redcap-user-login)

docs/acknowledgements.html

@@ -24,7 +24,7 @@
 <meta name="author" content="Will Beasley" />
 
 
-<meta name="date" content="2021-05-20" />
+<meta name="date" content="2021-06-08" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -456,6 +456,13 @@
 <li class="chapter" data-level="20.2" data-path="team.html"><a href="team.html#training-to-data-science"><i class="fa fa-check"></i><b>20.2</b> Training to Data Science</a></li>
 <li class="chapter" data-level="20.3" data-path="team.html"><a href="team.html#bridges-outside-the-team"><i class="fa fa-check"></i><b>20.3</b> Bridges Outside the Team</a></li>
 </ul></li>
+<li class="chapter" data-level="21" data-path="redcap-user.html"><a href="redcap-user.html"><i class="fa fa-check"></i><b>21</b> Material for REDCap Users</a>
+<ul>
+<li class="chapter" data-level="21.1" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-login"><i class="fa fa-check"></i><b>21.1</b> Login</a></li>
+<li class="chapter" data-level="21.2" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-report-develop"><i class="fa fa-check"></i><b>21.2</b> Developing Reports</a></li>
+</ul></li>
+<li class="chapter" data-level="22" data-path="redcap-developer.html"><a href="redcap-developer.html"><i class="fa fa-check"></i><b>22</b> Material for REDCap Developers</a></li>
+<li class="chapter" data-level="23" data-path="redcap-admin.html"><a href="redcap-admin.html"><i class="fa fa-check"></i><b>23</b> Material for REDCap Admins</a></li>
 <li class="appendix"><span><b>Appendix</b></span></li>
 <li class="chapter" data-level="A" data-path="git.html"><a href="git.html"><i class="fa fa-check"></i><b>A</b> Git &amp; GitHub</a>
 <ul>
@@ -548,7 +555,7 @@ <h1>
           <div class="page-inner">
 
             <section class="normal" id="section-">
-<div id="acknowledgements" class="section level1" number="27">
+<div id="acknowledgements" class="section level1" number="30">
 <h1><span class="header-section-number">G</span> Acknowledgements</h1>
 <p>The authors thank all our colleagues for the discussions and experiences about data science that lead to this book. At OUHSC, this includes
 <a href="https://github.com/adrose">@adrose</a>,

docs/architecture.html

@@ -24,7 +24,7 @@
 <meta name="author" content="Will Beasley" />
 
 
-<meta name="date" content="2021-05-20" />
+<meta name="date" content="2021-06-08" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -456,6 +456,13 @@
 <li class="chapter" data-level="20.2" data-path="team.html"><a href="team.html#training-to-data-science"><i class="fa fa-check"></i><b>20.2</b> Training to Data Science</a></li>
 <li class="chapter" data-level="20.3" data-path="team.html"><a href="team.html#bridges-outside-the-team"><i class="fa fa-check"></i><b>20.3</b> Bridges Outside the Team</a></li>
 </ul></li>
+<li class="chapter" data-level="21" data-path="redcap-user.html"><a href="redcap-user.html"><i class="fa fa-check"></i><b>21</b> Material for REDCap Users</a>
+<ul>
+<li class="chapter" data-level="21.1" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-login"><i class="fa fa-check"></i><b>21.1</b> Login</a></li>
+<li class="chapter" data-level="21.2" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-report-develop"><i class="fa fa-check"></i><b>21.2</b> Developing Reports</a></li>
+</ul></li>
+<li class="chapter" data-level="22" data-path="redcap-developer.html"><a href="redcap-developer.html"><i class="fa fa-check"></i><b>22</b> Material for REDCap Developers</a></li>
+<li class="chapter" data-level="23" data-path="redcap-admin.html"><a href="redcap-admin.html"><i class="fa fa-check"></i><b>23</b> Material for REDCap Admins</a></li>
 <li class="appendix"><span><b>Appendix</b></span></li>
 <li class="chapter" data-level="A" data-path="git.html"><a href="git.html"><i class="fa fa-check"></i><b>A</b> Git &amp; GitHub</a>
 <ul>

docs/automation.html

@@ -24,7 +24,7 @@
 <meta name="author" content="Will Beasley" />
 
 
-<meta name="date" content="2021-05-20" />
+<meta name="date" content="2021-06-08" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -456,6 +456,13 @@
 <li class="chapter" data-level="20.2" data-path="team.html"><a href="team.html#training-to-data-science"><i class="fa fa-check"></i><b>20.2</b> Training to Data Science</a></li>
 <li class="chapter" data-level="20.3" data-path="team.html"><a href="team.html#bridges-outside-the-team"><i class="fa fa-check"></i><b>20.3</b> Bridges Outside the Team</a></li>
 </ul></li>
+<li class="chapter" data-level="21" data-path="redcap-user.html"><a href="redcap-user.html"><i class="fa fa-check"></i><b>21</b> Material for REDCap Users</a>
+<ul>
+<li class="chapter" data-level="21.1" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-login"><i class="fa fa-check"></i><b>21.1</b> Login</a></li>
+<li class="chapter" data-level="21.2" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-report-develop"><i class="fa fa-check"></i><b>21.2</b> Developing Reports</a></li>
+</ul></li>
+<li class="chapter" data-level="22" data-path="redcap-developer.html"><a href="redcap-developer.html"><i class="fa fa-check"></i><b>22</b> Material for REDCap Developers</a></li>
+<li class="chapter" data-level="23" data-path="redcap-admin.html"><a href="redcap-admin.html"><i class="fa fa-check"></i><b>23</b> Material for REDCap Admins</a></li>
 <li class="appendix"><span><b>Appendix</b></span></li>
 <li class="chapter" data-level="A" data-path="git.html"><a href="git.html"><i class="fa fa-check"></i><b>A</b> Git &amp; GitHub</a>
 <ul>

docs/coding.html

@@ -24,7 +24,7 @@
 <meta name="author" content="Will Beasley" />
 
 
-<meta name="date" content="2021-05-20" />
+<meta name="date" content="2021-06-08" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -456,6 +456,13 @@
 <li class="chapter" data-level="20.2" data-path="team.html"><a href="team.html#training-to-data-science"><i class="fa fa-check"></i><b>20.2</b> Training to Data Science</a></li>
 <li class="chapter" data-level="20.3" data-path="team.html"><a href="team.html#bridges-outside-the-team"><i class="fa fa-check"></i><b>20.3</b> Bridges Outside the Team</a></li>
 </ul></li>
+<li class="chapter" data-level="21" data-path="redcap-user.html"><a href="redcap-user.html"><i class="fa fa-check"></i><b>21</b> Material for REDCap Users</a>
+<ul>
+<li class="chapter" data-level="21.1" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-login"><i class="fa fa-check"></i><b>21.1</b> Login</a></li>
+<li class="chapter" data-level="21.2" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-report-develop"><i class="fa fa-check"></i><b>21.2</b> Developing Reports</a></li>
+</ul></li>
+<li class="chapter" data-level="22" data-path="redcap-developer.html"><a href="redcap-developer.html"><i class="fa fa-check"></i><b>22</b> Material for REDCap Developers</a></li>
+<li class="chapter" data-level="23" data-path="redcap-admin.html"><a href="redcap-admin.html"><i class="fa fa-check"></i><b>23</b> Material for REDCap Admins</a></li>
 <li class="appendix"><span><b>Appendix</b></span></li>
 <li class="chapter" data-level="A" data-path="git.html"><a href="git.html"><i class="fa fa-check"></i><b>A</b> Git &amp; GitHub</a>
 <ul>

docs/collaboration.html

@@ -24,7 +24,7 @@
 <meta name="author" content="Will Beasley" />
 
 
-<meta name="date" content="2021-05-20" />
+<meta name="date" content="2021-06-08" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -456,6 +456,13 @@
 <li class="chapter" data-level="20.2" data-path="team.html"><a href="team.html#training-to-data-science"><i class="fa fa-check"></i><b>20.2</b> Training to Data Science</a></li>
 <li class="chapter" data-level="20.3" data-path="team.html"><a href="team.html#bridges-outside-the-team"><i class="fa fa-check"></i><b>20.3</b> Bridges Outside the Team</a></li>
 </ul></li>
+<li class="chapter" data-level="21" data-path="redcap-user.html"><a href="redcap-user.html"><i class="fa fa-check"></i><b>21</b> Material for REDCap Users</a>
+<ul>
+<li class="chapter" data-level="21.1" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-login"><i class="fa fa-check"></i><b>21.1</b> Login</a></li>
+<li class="chapter" data-level="21.2" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-report-develop"><i class="fa fa-check"></i><b>21.2</b> Developing Reports</a></li>
+</ul></li>
+<li class="chapter" data-level="22" data-path="redcap-developer.html"><a href="redcap-developer.html"><i class="fa fa-check"></i><b>22</b> Material for REDCap Developers</a></li>
+<li class="chapter" data-level="23" data-path="redcap-admin.html"><a href="redcap-admin.html"><i class="fa fa-check"></i><b>23</b> Material for REDCap Admins</a></li>
 <li class="appendix"><span><b>Appendix</b></span></li>
 <li class="chapter" data-level="A" data-path="git.html"><a href="git.html"><i class="fa fa-check"></i><b>A</b> Git &amp; GitHub</a>
 <ul>

docs/document.html

@@ -24,7 +24,7 @@
 <meta name="author" content="Will Beasley" />
 
 
-<meta name="date" content="2021-05-20" />
+<meta name="date" content="2021-06-08" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -456,6 +456,13 @@
 <li class="chapter" data-level="20.2" data-path="team.html"><a href="team.html#training-to-data-science"><i class="fa fa-check"></i><b>20.2</b> Training to Data Science</a></li>
 <li class="chapter" data-level="20.3" data-path="team.html"><a href="team.html#bridges-outside-the-team"><i class="fa fa-check"></i><b>20.3</b> Bridges Outside the Team</a></li>
 </ul></li>
+<li class="chapter" data-level="21" data-path="redcap-user.html"><a href="redcap-user.html"><i class="fa fa-check"></i><b>21</b> Material for REDCap Users</a>
+<ul>
+<li class="chapter" data-level="21.1" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-login"><i class="fa fa-check"></i><b>21.1</b> Login</a></li>
+<li class="chapter" data-level="21.2" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-report-develop"><i class="fa fa-check"></i><b>21.2</b> Developing Reports</a></li>
+</ul></li>
+<li class="chapter" data-level="22" data-path="redcap-developer.html"><a href="redcap-developer.html"><i class="fa fa-check"></i><b>22</b> Material for REDCap Developers</a></li>
+<li class="chapter" data-level="23" data-path="redcap-admin.html"><a href="redcap-admin.html"><i class="fa fa-check"></i><b>23</b> Material for REDCap Admins</a></li>
 <li class="appendix"><span><b>Appendix</b></span></li>
 <li class="chapter" data-level="A" data-path="git.html"><a href="git.html"><i class="fa fa-check"></i><b>A</b> Git &amp; GitHub</a>
 <ul>

docs/example-chapter.html

@@ -24,7 +24,7 @@
 <meta name="author" content="Will Beasley" />
 
 
-<meta name="date" content="2021-05-20" />
+<meta name="date" content="2021-06-08" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -456,6 +456,13 @@
 <li class="chapter" data-level="20.2" data-path="team.html"><a href="team.html#training-to-data-science"><i class="fa fa-check"></i><b>20.2</b> Training to Data Science</a></li>
 <li class="chapter" data-level="20.3" data-path="team.html"><a href="team.html#bridges-outside-the-team"><i class="fa fa-check"></i><b>20.3</b> Bridges Outside the Team</a></li>
 </ul></li>
+<li class="chapter" data-level="21" data-path="redcap-user.html"><a href="redcap-user.html"><i class="fa fa-check"></i><b>21</b> Material for REDCap Users</a>
+<ul>
+<li class="chapter" data-level="21.1" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-login"><i class="fa fa-check"></i><b>21.1</b> Login</a></li>
+<li class="chapter" data-level="21.2" data-path="redcap-user.html"><a href="redcap-user.html#redcap-user-report-develop"><i class="fa fa-check"></i><b>21.2</b> Developing Reports</a></li>
+</ul></li>
+<li class="chapter" data-level="22" data-path="redcap-developer.html"><a href="redcap-developer.html"><i class="fa fa-check"></i><b>22</b> Material for REDCap Developers</a></li>
+<li class="chapter" data-level="23" data-path="redcap-admin.html"><a href="redcap-admin.html"><i class="fa fa-check"></i><b>23</b> Material for REDCap Admins</a></li>
 <li class="appendix"><span><b>Appendix</b></span></li>
 <li class="chapter" data-level="A" data-path="git.html"><a href="git.html"><i class="fa fa-check"></i><b>A</b> Git &amp; GitHub</a>
 <ul>
@@ -548,24 +555,24 @@ <h1>
           <div class="page-inner">
 
             <section class="normal" id="section-">
-<div id="example-chapter" class="section level1" number="26">
+<div id="example-chapter" class="section level1" number="29">
 <h1><span class="header-section-number">F</span> Example Chapter</h1>
 <p><em>This intro was copied from the 1st chapter of the example bookdown repo. I’m keeping it temporarily for reference.</em></p>
 <p>You can label chapter and section titles using <code>{#label}</code> after them, e.g., we can reference the <a href="index.html#intro">Intro</a> Chapter. If you do not manually label them, there will be automatic labels anyway</p>
 <p>Figures and tables with captions will be placed in <code>figure</code> and <code>table</code> environments, respectively.</p>
-<div class="sourceCode" id="cb75"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb75-1"><a href="example-chapter.html#cb75-1" aria-hidden="true" tabindex="-1"></a><span class="fu">par</span>(<span class="at">mar =</span> <span class="fu">c</span>(<span class="dv">4</span>, <span class="dv">4</span>, .<span class="dv">1</span>, .<span class="dv">1</span>))</span>
-<span id="cb75-2"><a href="example-chapter.html#cb75-2" aria-hidden="true" tabindex="-1"></a><span class="fu">plot</span>(pressure, <span class="at">type =</span> <span class="st">&#39;b&#39;</span>, <span class="at">pch =</span> <span class="dv">19</span>)</span></code></pre></div>
+<div class="sourceCode" id="cb76"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb76-1"><a href="example-chapter.html#cb76-1" aria-hidden="true" tabindex="-1"></a><span class="fu">par</span>(<span class="at">mar =</span> <span class="fu">c</span>(<span class="dv">4</span>, <span class="dv">4</span>, .<span class="dv">1</span>, .<span class="dv">1</span>))</span>
+<span id="cb76-2"><a href="example-chapter.html#cb76-2" aria-hidden="true" tabindex="-1"></a><span class="fu">plot</span>(pressure, <span class="at">type =</span> <span class="st">&#39;b&#39;</span>, <span class="at">pch =</span> <span class="dv">19</span>)</span></code></pre></div>
 <div class="figure" style="text-align: center"><span id="fig:nice-fig"></span>
 <img src="data-science-practices-1_files/figure-html/nice-fig-1.png" alt="Here is a nice figure!" width="80%" />
 <p class="caption">
 Figure F.1: Here is a nice figure!
 </p>
 </div>
 <p>Reference a figure by its code chunk label with the <code>fig:</code> prefix, e.g., see Figure <a href="example-chapter.html#fig:nice-fig">F.1</a>. Similarly, you can reference tables generated from <code>knitr::kable()</code>, e.g., see Table <a href="example-chapter.html#tab:nice-tab">F.1</a>.</p>
-<div class="sourceCode" id="cb76"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb76-1"><a href="example-chapter.html#cb76-1" aria-hidden="true" tabindex="-1"></a>knitr<span class="sc">::</span><span class="fu">kable</span>(</span>
-<span id="cb76-2"><a href="example-chapter.html#cb76-2" aria-hidden="true" tabindex="-1"></a>  <span class="fu">head</span>(iris, <span class="dv">20</span>), <span class="at">caption =</span> <span class="st">&#39;Here is a nice table!&#39;</span>,</span>
-<span id="cb76-3"><a href="example-chapter.html#cb76-3" aria-hidden="true" tabindex="-1"></a>  <span class="at">booktabs =</span> <span class="cn">TRUE</span></span>
-<span id="cb76-4"><a href="example-chapter.html#cb76-4" aria-hidden="true" tabindex="-1"></a>)</span></code></pre></div>
+<div class="sourceCode" id="cb77"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb77-1"><a href="example-chapter.html#cb77-1" aria-hidden="true" tabindex="-1"></a>knitr<span class="sc">::</span><span class="fu">kable</span>(</span>
+<span id="cb77-2"><a href="example-chapter.html#cb77-2" aria-hidden="true" tabindex="-1"></a>  <span class="fu">head</span>(iris, <span class="dv">20</span>), <span class="at">caption =</span> <span class="st">&#39;Here is a nice table!&#39;</span>,</span>
+<span id="cb77-3"><a href="example-chapter.html#cb77-3" aria-hidden="true" tabindex="-1"></a>  <span class="at">booktabs =</span> <span class="cn">TRUE</span></span>
+<span id="cb77-4"><a href="example-chapter.html#cb77-4" aria-hidden="true" tabindex="-1"></a>)</span></code></pre></div>
 <table>
 <caption><span id="tab:nice-tab">Table F.1: </span>Here is a nice table!</caption>
 <thead>