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1. SNPdiscovery SNPdiscovery Public

   Scripts for Methods in Molecular Biology chapter on SNP discovery

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2. Structure_Clumpp_Spatial_mapping_R Structure_Clumpp_Spatial_mapping_R Public

   Rmarkdown scripts and test files for running STRUCTURE analysis, combining replicates with CLUMPP, and generating assignment barplots and spatial interpolation of ancestry coefficient

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3. TESS3r_SNPs TESS3r_SNPs Public

   R-markdown script for geographic population genetic structure analysis with Tess3r

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4. HWE_LD_Jack_tests HWE_LD_Jack_tests Public

   Multi-test corrected tests for LD and HWE, with jackknife analysis to ID genotypes affecting HWE.

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5. IBD IBD Public

   Isolation by distance (IBD) analyses for population genetic data.

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6. sPCA sPCA Public

   R Markdown scripts for spatial PCA (sPCA) analysis of genotype data

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