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@PDB-REDO

PDB-REDO

Tools for macromolecular structure optimisation and analysis

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  1. dssp dssp Public

    Application to assign secondary structure to proteins

    C++ 200 21

  2. alphafill alphafill Public

    AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the mod…

    C++ 100 19

  3. libcifpp libcifpp Public

    Library containing code to manipulate mmCIF and PDB files

    C++ 35 14

  4. density-fitness density-fitness Public

    Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

    C++ 6

  5. tortoize tortoize Public

    Application to calculate ramachandran z-scores

    C++

  6. platonyzer platonyzer Public

    CMake

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