Merge pull request #1 from PEDSnet/redevelopment

Redevelopment

README.md

@@ -15,7 +15,7 @@ The variables page includes variable definitions for PEDSnet studies organized i
 ## CODESETS PAGE:
 The codesets page include a list of codesets organized by data domain. 
 
-[CODESETS PAGE](./pages/codesets.md)
+[CODESETS PAGE](./pages/codesets_landing.md)
 
 ## .csv DOWNLOAD INSTRUCTIONS:
 This page provides step-by-step instruction for downloading a .csv codeset file from GitHub.

condition/dx_ADHD.csv

@@ -0,0 +1,13 @@
+concept_id,concept_code,concept_name,vocabulary_id
+44784525,698692009,"Attention deficit hyperactivity disorder, predominantly hyperactive impulsive type in remission",SNOMED
+4149904,31177006,"Attention deficit hyperactivity disorder, combined type",SNOMED
+438132,192132008,Hyperkinetic conduct disorder,SNOMED
+45765796,702815001,"Attention deficit hyperactivity disorder, inattentive presentation (restrictive)",SNOMED
+44782517,698689005,"Attention deficit hyperactivity disorder, predominantly inattentive type in remission",SNOMED
+4253962,7461003,"Attention deficit hyperactivity disorder, predominantly hyperactive impulsive type",SNOMED
+440086,192127007,Child attention deficit disorder,SNOMED
+4149353,35253001,"Attention deficit hyperactivity disorder, predominantly inattentive type",SNOMED
+437261,192131001,Hyperkinesis with developmental delay,SNOMED
+4041692,229715008,Deficits in attention motor control and perception,SNOMED
+438409,406506008,Attention deficit hyperactivity disorder,SNOMED
+4049391,23148009,Undifferentiated attention deficit disorder,SNOMED

condition/dx_asthma.csv

@@ -0,0 +1,113 @@
+concept_id,concept_code,concept_name,vocabulary_id
+40483397,445427006,Seasonal asthma,SNOMED
+4232595,404804003,Platinum asthma,SNOMED
+46269776,10675871000119106,Mild persistent allergic asthma,SNOMED
+43530745,401000119107,Asthma with irreversible airway obstruction,SNOMED
+45769441,708093000,Acute exacerbation of allergic asthma,SNOMED
+46269767,10674711000119105,Acute severe exacerbation of asthma co-occurrent with allergic rhinitis,SNOMED
+45768963,707511009,Uncomplicated mild persistent asthma,SNOMED
+257583,37981002,Allergic bronchopulmonary aspergillosis,SNOMED
+46270028,124991000119109,Severe persistent asthma co-occurrent with allergic rhinitis,SNOMED
+45772073,10742121000119104,Asthma in mother complicating childbirth,SNOMED
+45769352,707981009,Acute severe exacerbation of mild persistent asthma,SNOMED
+46273452,99031000119107,Acute exacerbation of asthma co-occurrent with allergic rhinitis,SNOMED
+46269802,10692721000119102,Chronic obstructive asthma co-occurrent with acute exacerbation of asthma,SNOMED
+4141978,427603009,Intermittent asthma,SNOMED
+4119298,233679003,Late onset asthma,SNOMED
+4120261,233688007,Sulfite-induced asthma,SNOMED
+4152913,370221004,Severe asthma,SNOMED
+42539549,735588005,Uncomplicated allergic asthma,SNOMED
+4057952,19849005,Meat-wrappers' asthma,SNOMED
+4250128,407674008,Aspirin-induced asthma,SNOMED
+36684328,782513000,Acute severe exacerbation of allergic asthma,SNOMED
+4244339,93432008,Drug-induced asthma,SNOMED
+36684335,782520007,Exacerbation of allergic asthma due to infection,SNOMED
+45766728,703954005,Allergic asthma due to Dermatophagoides farinae,SNOMED
+4155470,370220003,Occasional asthma,SNOMED
+37108581,10675751000119107,Severe uncontrolled persistent asthma,SNOMED
+4145356,426656000,Severe persistent asthma,SNOMED
+4080516,18041002,Printers' asthma,SNOMED
+37208352,1103911000000103,Severe asthma with fungal sensitisation,SNOMED
+46269777,10675991000119100,Acute severe exacerbation of mild persistent allergic asthma co-occurrent with allergic rhinitis,SNOMED
+4245676,92807009,Chemical-induced asthma,SNOMED
+46269784,10676391000119108,Moderate persistent allergic asthma,SNOMED
+46274124,10675911000119109,Acute severe exacerbation of mild persistent allergic asthma,SNOMED
+313236,409663006,Cough variant asthma,SNOMED
+4225553,404806001,Cheese-makers' asthma,SNOMED
+257581,281239006,Acute asthma,SNOMED
+46270322,1741000119102,Intermittent asthma uncontrolled,SNOMED
+45768965,707513007,Uncomplicated severe persistent asthma,SNOMED
+40481763,442025000,Acute exacerbation of chronic asthmatic bronchitis,SNOMED
+46269770,10675431000119106,Severe persistent allergic asthma,SNOMED
+46270029,125011000119100,Mild persistent asthma co-occurrent with allergic rhinitis,SNOMED
+312950,424643009,IgE-mediated allergic asthma,SNOMED
+4212099,57607007,Occupational asthma,SNOMED
+46274062,10692761000119107,Asthma-chronic obstructive pulmonary disease overlap syndrome,SNOMED
+45766727,703953004,Allergic asthma due to Dermatophagoides pteronyssinus,SNOMED
+4123253,233683003,Hay fever with asthma,SNOMED
+4155469,370219009,Moderate asthma,SNOMED
+45768912,707447008,Exacerbation of severe persistent asthma,SNOMED
+4110051,195977004,Mixed asthma,SNOMED
+45769438,708090002,Acute severe exacerbation of asthma,SNOMED
+45768910,707444001,Uncomplicated asthma,SNOMED
+4225554,404808000,Isocyanate induced asthma,SNOMED
+4146581,427679007,Mild intermittent asthma,SNOMED
+46269771,10675551000119104,Acute severe exacerbation of severe persistent asthma co-occurrent with allergic rhinitis,SNOMED
+3661412,829976001,Thunderstorm asthma,SNOMED
+46273454,125001000119103,Moderate persistent asthma co-occurrent with allergic rhinitis,SNOMED
+37310241,10674991000119104,Intermittent allergic asthma,SNOMED
+4155468,370218001,Mild asthma,SNOMED
+4217558,41553006,Detergent asthma,SNOMED
+764949,901000119100,"Persistent asthma, well controlled",SNOMED
+45773005,708094006,Acute exacerbation of intrinsic asthma,SNOMED
+256448,195949008,Chronic asthmatic bronchitis,SNOMED
+4245292,59786004,Weavers' cough,SNOMED
+42536208,734905008,Moderate acute exacerbation of asthma,SNOMED
+4051466,233678006,Childhood asthma,SNOMED
+45769443,708096008,Acute severe exacerbation of intrinsic asthma,SNOMED
+35609846,1086701000000102,Life threatening acute exacerbation of allergic asthma,SNOMED
+45769350,707979007,Acute severe exacerbation of severe persistent asthma,SNOMED
+46269801,10692681000119108,Aspirin exacerbated respiratory disease,SNOMED
+46273462,10676431000119103,Acute severe exacerbation of moderate persistent allergic asthma,SNOMED
+46274059,10675471000119109,Acute severe exacerbation of severe persistent allergic asthma,SNOMED
+46270030,125021000119107,Intermittent asthma co-occurrent with allergic rhinitis,SNOMED
+4143828,426979002,Mild persistent asthma,SNOMED
+761844,16055311000119107,Inhaled steroid-dependent asthma,SNOMED
+4206340,55570000,Asthma without status asthmaticus,SNOMED
+42536649,735589002,Uncomplicated non-allergic asthma,SNOMED
+4309833,423889005,Non-IgE mediated allergic asthma,SNOMED
+4143474,34015007,Bakers' asthma,SNOMED
+37116845,733858005,Acute severe refractory exacerbation of asthma,SNOMED
+4233784,405944004,Asthmatic bronchitis,SNOMED
+317009,195967001,Asthma,SNOMED
+4142738,427295004,Moderate persistent asthma,SNOMED
+37206717,786836003,Near fatal asthma,SNOMED
+4301938,418395004,Tea-makers' asthma,SNOMED
+764677,5281000124103,Persistent asthma,SNOMED
+45769351,707980005,Acute severe exacerbation of moderate persistent asthma,SNOMED
+4119300,233687002,Colophony asthma,SNOMED
+42535716,72301000119103,Asthma in pregnancy,SNOMED
+4022592,11641008,Millers' asthma,SNOMED
+4138760,425969006,Exacerbation of intermittent asthma,SNOMED
+37109103,16584951000119101,Oral steroid-dependent asthma,SNOMED
+45768964,707512002,Uncomplicated moderate persistent asthma,SNOMED
+45769442,708095007,Acute severe exacerbation of immunoglobin E-mediated allergic asthma,SNOMED
+46273635,2360001000004109,Steroid dependent asthma,SNOMED
+4312524,424199006,Substance induced asthma,SNOMED
+4211530,56968009,Asthma caused by wood dust,SNOMED
+45772937,707446004,Exacerbation of moderate persistent asthma,SNOMED
+43530693,1751000119100,Acute exacerbation of chronic obstructive airways disease with asthma,SNOMED
+4191479,389145006,Allergic asthma,SNOMED
+252658,12428000,Intrinsic asthma without status asthmaticus,SNOMED
+4145497,266361008,Intrinsic asthma,SNOMED
+4271333,63088003,Allergic asthma without status asthmaticus,SNOMED
+4075237,225057002,Brittle asthma,SNOMED
+35609847,1086711000000100,Life threatening acute exacerbation of intrinsic asthma,SNOMED
+42538744,762521001,Exacerbation of allergic asthma,SNOMED
+45757063,103781000119103,Allergic bronchopulmonary mycosis,SNOMED
+44810117,866881000000101,Chronic asthma with fixed airflow obstruction,SNOMED
+46269785,10676511000119109,Acute severe exacerbation of moderate persistent asthma co-occurrent with allergic rhinitis,SNOMED
+42536207,734904007,Life threatening acute exacerbation of asthma,SNOMED
+37108580,10675391000119101,Severe controlled persistent asthma,SNOMED
+443801,31387002,Exercise-induced asthma,SNOMED
+45768911,707445000,Exacerbation of mild persistent asthma,SNOMED

condition/dx_autism.csv

@@ -0,0 +1,15 @@
+concept_id,concept_code,concept_name,vocabulary_id
+37116742,733623005,"Autism spectrum disorder, epilepsy, arthrogryposis syndrome",SNOMED
+434902,43614003,Autistic disorder of childhood onset,SNOMED
+36717734,719600006,1p21.3 microdeletion syndrome,SNOMED
+439703,191689008,Active infantile autism,SNOMED
+439780,408856003,Autistic disorder,SNOMED
+439702,191690004,Residual infantile autism,SNOMED
+37204430,783089006,"Macrocephaly, intellectual disability, autism syndrome",SNOMED
+36674903,770790004,Developmental delay with autism spectrum disorder and gait instability,SNOMED
+45765723,702732007,High-functioning autism,SNOMED
+36675177,771512003,Autism spectrum disorder due to AUTS2 deficiency,SNOMED
+35624210,766824003,"ADNP-related multiple congenital anomalies, intellectual disability, autism spectrum disorder",SNOMED
+36675122,771448004,Autism epilepsy syndrome due to branched chain ketoacid dehydrogenase kinase deficiency,SNOMED
+4254211,408857007,Infantile autism,SNOMED
+36716319,722287002,Autism and facial port-wine stain syndrome,SNOMED