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Redevelopment #1

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Nov 3, 2023
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58d5297
Rename codesets.md to codesets_variables.md
shorrocka Jun 15, 2023
3403884
Rename health_conditions.md to health_conditions_variables.md
shorrocka Jun 15, 2023
1b4b647
Rename laboratories.md to laboratories_variables.md
shorrocka Jun 15, 2023
389692e
Rename medications.md to medications_variables.md
shorrocka Jun 15, 2023
ae59c52
Rename physiologic_measurements.md to physiologic_measurements_variab…
shorrocka Jun 15, 2023
acc3137
Rename procedures.md to procedures_variables.md
shorrocka Jun 15, 2023
bb2ed98
Rename sociodemographics.md to sociodemographics_variables.md
shorrocka Jun 15, 2023
4c384b7
Rename utilization.md to utilization_variables.md
shorrocka Jun 15, 2023
3a4e1f9
Create medication_codesets.md
shorrocka Jun 15, 2023
26da5df
Create procedures_codesets.md
shorrocka Jun 15, 2023
418ade1
Create conditions.md
shorrocka Jun 15, 2023
574fc57
Create measurements_codesets.md
shorrocka Jun 15, 2023
9f27d98
Create visits_codesets.md
shorrocka Jun 15, 2023
fb03a9e
Create codesets_landing.md
shorrocka Jun 15, 2023
83d1cd5
Update codesets_landing.md
shorrocka Jun 15, 2023
7c44fa7
Update medication_codesets.md
shorrocka Jun 15, 2023
e125043
Update visits_codesets.md
shorrocka Jun 15, 2023
bd0927d
Update conditions.md
shorrocka Jun 15, 2023
fb6946c
Update measurements_codesets.md
shorrocka Jun 15, 2023
1d09f75
Update procedures_codesets.md
shorrocka Jun 15, 2023
79c1a11
Update README.md
shorrocka Jun 15, 2023
ecd4447
Update codesets_landing.md
shorrocka Jun 15, 2023
1edf6f9
Update codesets_landing.md
shorrocka Jun 15, 2023
f050d23
Update README.md
shorrocka Jun 15, 2023
c704ab0
Update README.md
shorrocka Jun 15, 2023
879bd45
Update README.md
shorrocka Jun 15, 2023
7e3ed8b
changes for redcap redisign
shorrocka Jul 3, 2023
a5e4f28
adding header links
shorrocka Jul 3, 2023
8668624
fixed the link for older codesets
shorrocka Jul 5, 2023
948b8e3
Update README.md
shorrocka Jul 5, 2023
9a1142e
change file names
shorrocka Jul 18, 2023
bc70666
adding other codesets
shorrocka Jul 18, 2023
2b2b570
big changes to the varirable dictinary to have all codesets have a page
shorrocka Jul 31, 2023
2132010
adding all these files
shorrocka Jul 31, 2023
7931296
Update codesets_landing.md
shorrocka Jul 31, 2023
0f8cc8d
changing headers and links
shorrocka Jul 31, 2023
2e4db38
fixing the links
shorrocka Jul 31, 2023
1879f87
fixing the links (again):wq
shorrocka Jul 31, 2023
8072c65
changing the names to be full
shorrocka Sep 11, 2023
57ae98b
lots of changes
shorrocka Nov 3, 2023
3ff0bff
adding new codesets
shorrocka Nov 3, 2023
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2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ The variables page includes variable definitions for PEDSnet studies organized i
## CODESETS PAGE:
The codesets page include a list of codesets organized by data domain.

[CODESETS PAGE](./pages/codesets.md)
[CODESETS PAGE](./pages/codesets_landing.md)

## .csv DOWNLOAD INSTRUCTIONS:
This page provides step-by-step instruction for downloading a .csv codeset file from GitHub.
Expand Down
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13 changes: 13 additions & 0 deletions condition/dx_ADHD.csv
Original file line number Diff line number Diff line change
@@ -0,0 +1,13 @@
concept_id,concept_code,concept_name,vocabulary_id
44784525,698692009,"Attention deficit hyperactivity disorder, predominantly hyperactive impulsive type in remission",SNOMED
4149904,31177006,"Attention deficit hyperactivity disorder, combined type",SNOMED
438132,192132008,Hyperkinetic conduct disorder,SNOMED
45765796,702815001,"Attention deficit hyperactivity disorder, inattentive presentation (restrictive)",SNOMED
44782517,698689005,"Attention deficit hyperactivity disorder, predominantly inattentive type in remission",SNOMED
4253962,7461003,"Attention deficit hyperactivity disorder, predominantly hyperactive impulsive type",SNOMED
440086,192127007,Child attention deficit disorder,SNOMED
4149353,35253001,"Attention deficit hyperactivity disorder, predominantly inattentive type",SNOMED
437261,192131001,Hyperkinesis with developmental delay,SNOMED
4041692,229715008,Deficits in attention motor control and perception,SNOMED
438409,406506008,Attention deficit hyperactivity disorder,SNOMED
4049391,23148009,Undifferentiated attention deficit disorder,SNOMED
113 changes: 113 additions & 0 deletions condition/dx_asthma.csv
Original file line number Diff line number Diff line change
@@ -0,0 +1,113 @@
concept_id,concept_code,concept_name,vocabulary_id
40483397,445427006,Seasonal asthma,SNOMED
4232595,404804003,Platinum asthma,SNOMED
46269776,10675871000119106,Mild persistent allergic asthma,SNOMED
43530745,401000119107,Asthma with irreversible airway obstruction,SNOMED
45769441,708093000,Acute exacerbation of allergic asthma,SNOMED
46269767,10674711000119105,Acute severe exacerbation of asthma co-occurrent with allergic rhinitis,SNOMED
45768963,707511009,Uncomplicated mild persistent asthma,SNOMED
257583,37981002,Allergic bronchopulmonary aspergillosis,SNOMED
46270028,124991000119109,Severe persistent asthma co-occurrent with allergic rhinitis,SNOMED
45772073,10742121000119104,Asthma in mother complicating childbirth,SNOMED
45769352,707981009,Acute severe exacerbation of mild persistent asthma,SNOMED
46273452,99031000119107,Acute exacerbation of asthma co-occurrent with allergic rhinitis,SNOMED
46269802,10692721000119102,Chronic obstructive asthma co-occurrent with acute exacerbation of asthma,SNOMED
4141978,427603009,Intermittent asthma,SNOMED
4119298,233679003,Late onset asthma,SNOMED
4120261,233688007,Sulfite-induced asthma,SNOMED
4152913,370221004,Severe asthma,SNOMED
42539549,735588005,Uncomplicated allergic asthma,SNOMED
4057952,19849005,Meat-wrappers' asthma,SNOMED
4250128,407674008,Aspirin-induced asthma,SNOMED
36684328,782513000,Acute severe exacerbation of allergic asthma,SNOMED
4244339,93432008,Drug-induced asthma,SNOMED
36684335,782520007,Exacerbation of allergic asthma due to infection,SNOMED
45766728,703954005,Allergic asthma due to Dermatophagoides farinae,SNOMED
4155470,370220003,Occasional asthma,SNOMED
37108581,10675751000119107,Severe uncontrolled persistent asthma,SNOMED
4145356,426656000,Severe persistent asthma,SNOMED
4080516,18041002,Printers' asthma,SNOMED
37208352,1103911000000103,Severe asthma with fungal sensitisation,SNOMED
46269777,10675991000119100,Acute severe exacerbation of mild persistent allergic asthma co-occurrent with allergic rhinitis,SNOMED
4245676,92807009,Chemical-induced asthma,SNOMED
46269784,10676391000119108,Moderate persistent allergic asthma,SNOMED
46274124,10675911000119109,Acute severe exacerbation of mild persistent allergic asthma,SNOMED
313236,409663006,Cough variant asthma,SNOMED
4225553,404806001,Cheese-makers' asthma,SNOMED
257581,281239006,Acute asthma,SNOMED
46270322,1741000119102,Intermittent asthma uncontrolled,SNOMED
45768965,707513007,Uncomplicated severe persistent asthma,SNOMED
40481763,442025000,Acute exacerbation of chronic asthmatic bronchitis,SNOMED
46269770,10675431000119106,Severe persistent allergic asthma,SNOMED
46270029,125011000119100,Mild persistent asthma co-occurrent with allergic rhinitis,SNOMED
312950,424643009,IgE-mediated allergic asthma,SNOMED
4212099,57607007,Occupational asthma,SNOMED
46274062,10692761000119107,Asthma-chronic obstructive pulmonary disease overlap syndrome,SNOMED
45766727,703953004,Allergic asthma due to Dermatophagoides pteronyssinus,SNOMED
4123253,233683003,Hay fever with asthma,SNOMED
4155469,370219009,Moderate asthma,SNOMED
45768912,707447008,Exacerbation of severe persistent asthma,SNOMED
4110051,195977004,Mixed asthma,SNOMED
45769438,708090002,Acute severe exacerbation of asthma,SNOMED
45768910,707444001,Uncomplicated asthma,SNOMED
4225554,404808000,Isocyanate induced asthma,SNOMED
4146581,427679007,Mild intermittent asthma,SNOMED
46269771,10675551000119104,Acute severe exacerbation of severe persistent asthma co-occurrent with allergic rhinitis,SNOMED
3661412,829976001,Thunderstorm asthma,SNOMED
46273454,125001000119103,Moderate persistent asthma co-occurrent with allergic rhinitis,SNOMED
37310241,10674991000119104,Intermittent allergic asthma,SNOMED
4155468,370218001,Mild asthma,SNOMED
4217558,41553006,Detergent asthma,SNOMED
764949,901000119100,"Persistent asthma, well controlled",SNOMED
45773005,708094006,Acute exacerbation of intrinsic asthma,SNOMED
256448,195949008,Chronic asthmatic bronchitis,SNOMED
4245292,59786004,Weavers' cough,SNOMED
42536208,734905008,Moderate acute exacerbation of asthma,SNOMED
4051466,233678006,Childhood asthma,SNOMED
45769443,708096008,Acute severe exacerbation of intrinsic asthma,SNOMED
35609846,1086701000000102,Life threatening acute exacerbation of allergic asthma,SNOMED
45769350,707979007,Acute severe exacerbation of severe persistent asthma,SNOMED
46269801,10692681000119108,Aspirin exacerbated respiratory disease,SNOMED
46273462,10676431000119103,Acute severe exacerbation of moderate persistent allergic asthma,SNOMED
46274059,10675471000119109,Acute severe exacerbation of severe persistent allergic asthma,SNOMED
46270030,125021000119107,Intermittent asthma co-occurrent with allergic rhinitis,SNOMED
4143828,426979002,Mild persistent asthma,SNOMED
761844,16055311000119107,Inhaled steroid-dependent asthma,SNOMED
4206340,55570000,Asthma without status asthmaticus,SNOMED
42536649,735589002,Uncomplicated non-allergic asthma,SNOMED
4309833,423889005,Non-IgE mediated allergic asthma,SNOMED
4143474,34015007,Bakers' asthma,SNOMED
37116845,733858005,Acute severe refractory exacerbation of asthma,SNOMED
4233784,405944004,Asthmatic bronchitis,SNOMED
317009,195967001,Asthma,SNOMED
4142738,427295004,Moderate persistent asthma,SNOMED
37206717,786836003,Near fatal asthma,SNOMED
4301938,418395004,Tea-makers' asthma,SNOMED
764677,5281000124103,Persistent asthma,SNOMED
45769351,707980005,Acute severe exacerbation of moderate persistent asthma,SNOMED
4119300,233687002,Colophony asthma,SNOMED
42535716,72301000119103,Asthma in pregnancy,SNOMED
4022592,11641008,Millers' asthma,SNOMED
4138760,425969006,Exacerbation of intermittent asthma,SNOMED
37109103,16584951000119101,Oral steroid-dependent asthma,SNOMED
45768964,707512002,Uncomplicated moderate persistent asthma,SNOMED
45769442,708095007,Acute severe exacerbation of immunoglobin E-mediated allergic asthma,SNOMED
46273635,2360001000004109,Steroid dependent asthma,SNOMED
4312524,424199006,Substance induced asthma,SNOMED
4211530,56968009,Asthma caused by wood dust,SNOMED
45772937,707446004,Exacerbation of moderate persistent asthma,SNOMED
43530693,1751000119100,Acute exacerbation of chronic obstructive airways disease with asthma,SNOMED
4191479,389145006,Allergic asthma,SNOMED
252658,12428000,Intrinsic asthma without status asthmaticus,SNOMED
4145497,266361008,Intrinsic asthma,SNOMED
4271333,63088003,Allergic asthma without status asthmaticus,SNOMED
4075237,225057002,Brittle asthma,SNOMED
35609847,1086711000000100,Life threatening acute exacerbation of intrinsic asthma,SNOMED
42538744,762521001,Exacerbation of allergic asthma,SNOMED
45757063,103781000119103,Allergic bronchopulmonary mycosis,SNOMED
44810117,866881000000101,Chronic asthma with fixed airflow obstruction,SNOMED
46269785,10676511000119109,Acute severe exacerbation of moderate persistent asthma co-occurrent with allergic rhinitis,SNOMED
42536207,734904007,Life threatening acute exacerbation of asthma,SNOMED
37108580,10675391000119101,Severe controlled persistent asthma,SNOMED
443801,31387002,Exercise-induced asthma,SNOMED
45768911,707445000,Exacerbation of mild persistent asthma,SNOMED
15 changes: 15 additions & 0 deletions condition/dx_autism.csv
Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
concept_id,concept_code,concept_name,vocabulary_id
37116742,733623005,"Autism spectrum disorder, epilepsy, arthrogryposis syndrome",SNOMED
434902,43614003,Autistic disorder of childhood onset,SNOMED
36717734,719600006,1p21.3 microdeletion syndrome,SNOMED
439703,191689008,Active infantile autism,SNOMED
439780,408856003,Autistic disorder,SNOMED
439702,191690004,Residual infantile autism,SNOMED
37204430,783089006,"Macrocephaly, intellectual disability, autism syndrome",SNOMED
36674903,770790004,Developmental delay with autism spectrum disorder and gait instability,SNOMED
45765723,702732007,High-functioning autism,SNOMED
36675177,771512003,Autism spectrum disorder due to AUTS2 deficiency,SNOMED
35624210,766824003,"ADNP-related multiple congenital anomalies, intellectual disability, autism spectrum disorder",SNOMED
36675122,771448004,Autism epilepsy syndrome due to branched chain ketoacid dehydrogenase kinase deficiency,SNOMED
4254211,408857007,Infantile autism,SNOMED
36716319,722287002,Autism and facial port-wine stain syndrome,SNOMED
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