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WIP: Specification of Timecourses #581

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3714b90
fix #525
FFroehlich Nov 16, 2021
8681ebf
fix #524
FFroehlich Nov 16, 2021
ed45001
Update tutorial.rst
FFroehlich Nov 16, 2021
f0b68e6
Proposal for the introduction of extensions (#537)
FFroehlich Mar 16, 2022
45728fd
Fix extension name regex in issue template
dweindl Mar 17, 2022
ff31205
Add `required` attribute to extensions in yaml file (#545)
dweindl Jul 20, 2022
ff435d0
Clarify implications of 'parameterScale' (#547)
dweindl Mar 10, 2023
ce6e768
Fix .rst formatting (#563)
dweindl Jun 27, 2023
f8435af
Merge branch 'main' into release/2.0.0
dweindl May 16, 2024
cf08a07
Merge branch 'main' into release/2.0.0
dweindl May 21, 2024
31c2628
- add time course files to yaml schema
fbergmann May 22, 2024
f82115e
- add description of time courses table
fbergmann May 22, 2024
39939ad
- modify measurement table
fbergmann May 22, 2024
fa25963
- condition table now optional
fbergmann May 22, 2024
0f5771f
- add condition changes
fbergmann May 22, 2024
57f3a98
- formatting
fbergmann May 22, 2024
ca12430
- updated scope & files
fbergmann May 22, 2024
dbfc577
Specification of math expressions (#579)
dweindl Jun 26, 2024
f6a4992
Merge branch 'release/2.0.0' into v2_timecourses
dweindl Jun 26, 2024
3447ec6
Merge branch 'main' into v2_timecourses
dweindl Dec 5, 2024
ea3a67e
Merge pt2
dweindl Dec 5, 2024
01a4541
missing figure
dweindl Dec 5, 2024
ce8b040
restore v1 schema
dweindl Dec 5, 2024
5933d5a
Update experiment table
dweindl Dec 5, 2024
86d94af
conditions table, links
dweindl Dec 5, 2024
3769eac
..
dweindl Dec 5, 2024
59eefdc
value types
dweindl Dec 5, 2024
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14 changes: 11 additions & 3 deletions doc/v2/_static/petab_schema_v2.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -34,8 +34,9 @@ properties:

type: object
description: |
A set of PEtab model, condition, observable and measurement
files and optional visualization files.
A set of PEtab model, observable and measurement
files and optional condition, experiment, and visualization files.

properties:

model_files:
Expand Down Expand Up @@ -75,6 +76,14 @@ properties:
type: string
description: PEtab condition file name or URL.

experiment_files:
type: array
description: List of PEtab experiment files

items:
type: string
description: PEtab experiment file name or URL.

observable_files:
type: array
description: List of PEtab observable files.
Expand Down Expand Up @@ -103,7 +112,6 @@ properties:
- model_files
- observable_files
- measurement_files
- condition_files

extensions:
type: object
Expand Down
369 changes: 277 additions & 92 deletions doc/v2/documentation_data_format.rst

Large diffs are not rendered by default.

Binary file added doc/v2/gfx/petab_files.png
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