Build on SCOREC Workstations

Debian Jessie

Install Dependencies

Install SCOREC/core. In the instructions below we assume that core is installed to $HOME/build-core-jessie/install.

Setup

For the instructions below we assume the following commands are run in your $HOME directory.

git clone [email protected]:cwsmith/phastaChef.git
git clone [email protected]:PHASTA/phasta.git
wget www.scorec.rpi.edu/~cwsmith/phastaChefTests.tar.gz .
tar xzf phastaChefTests.tar.gz # use for CASES path below
mkdir build-phastaChef-jessie

Configure

Create an environment script with the following name $HOME/env.phastachef-jessie.sh

module load \
cmake/latest \
mpich3/3.1.2-thread-multiple \
parmetis/mpich3.1.2/4.0.3 \
zoltan/mpich3.1.2/3.81 \
simmetrix/simModSuite \
libles

Below is a semi-fancy bash script to run cmake. Copy and paste the contents into a file named $HOME/config-phastachef-jessie.sh.

#!/bin/bash -e
baseflags="-fno-omit-frame-pointer -Wall -Wextra -pedantic "

usage() {
   echo "Usage: $0 <buildType=dbg|opt|dbgopt|asan> <testing=true|false>"
}

type=$1
[[ "opt" != "$type" &&
   "dbg" != "$type" &&
   "dbgopt" != "$type" &&
   "asan" != "$type" ]] &&
   usage &&
   exit 1

testing=$2
[[ "true" != "$testing" &&
   "false" != "$testing" ]] &&
   usage &&
   exit 1

flags_opt="$baseflags -O2 "
flags_dbg="$baseflags -g -O0 "
flags_dbgopt="$baseflags -g -O2 "
flags_asan="$flags_dbg -fsanitize=address "
flags=flags_${type}


echo "flags ${!flags}"

set -x
cmake $HOME/phastaChef \
-DCMAKE_C_COMPILER=`which mpicc` \
-DCMAKE_CXX_COMPILER=`which mpicxx` \
-DCMAKE_C_FLAGS="${!flags}" \
-DCMAKE_CXX_FLAGS="${!flags}" \
-DCMAKE_Fortran_FLAGS="${!flags}" \
-DCMAKE_EXE_LINKER_FLAGS="-ldl ${!flags}" \
\
-DSCOREC_PREFIX=$HOME/build-core-jessie/install \
\
-DPHASTA_SRC_DIR=$HOME/phasta \
-DPHASTA_INCOMPRESSIBLE=ON \
-DPHASTA_COMPRESSIBLE=ON \
-DPHASTA_TESTING=ON \
\
-DPHASTA_USE_SVLS=OFF \
-DPHASTA_USE_PETSC=OFF \
-DPHASTA_USE_LESLIB=ON \
-DLESLIB=$LIBLES \
\
-DCASES=$HOME/phastaChefTests/
set +x

Make the script executable

chmod +x $HOME/config-phastachef-jessie.sh

Run the environment and config script

source $HOME/env.phastachef-jessie.sh
cd build-phastaChef-jessie
$HOME/config-phastachef-jessie.sh dbgopt on

Build

cd build-phastaChef-jessie
make

Re-build

If you have just logged in and have run make before then you only need to do the following

source $HOME/env.phastachef-jessie.sh
cd build-phastaChef-jessie
make