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Lazareva committed Sep 12, 2024
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4 changes: 2 additions & 2 deletions README.md
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<div style="text-align: center;">
<img src="https://github.com/PMBio/spaceTree/blob/master/docs/space_tree.png?raw=true alt="spacetree logo" width="200"/>
<img src="https://github.com/PMBio/spaceTree/blob/master/docs/space_tree.png?raw=true" alt="spacetree logo" width="200"/>
</div>

SpaceTree: Deciphering Tumor Microenvironments by joint modeling of cell states and genotype-phenotype relationships in spatial omics data
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<div style="text-align: center;">
<img src="https://github.com/PMBio/spaceTree/blob/master/docs/schema.jpg?raw=true" alt="spacetree logo" width="1000"/>
<img src="https://github.com/PMBio/spaceTree/blob/master/docs/schema.jpg?raw=true" alt="spacetree schema" width="1000"/>
</div>

Overview of the spatial mapping approach and the workflow enabled by SpaceTree.From left to right: SpaceTree requirs as input reference (scRNA-seq) and spatial count matrices as well as labels that need to be transfered. The labels can be descrete, continious or hierachical. The model outputs a spatial mapping of the labels and the cell type (compositions in case of Visium) of the spatial regions.
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2 changes: 1 addition & 1 deletion setup.py
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setup(
name="spaceTree", # Name of your package
version="0.1.1", # Version
version="0.1.2", # Version
author="Your Name",
author_email="[email protected]",
description="PyPI package for multi-task label transfer from single-cell refrence data to spatial data", # Short description
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