Built site for gh-pages

PMCC-BioinformaticsCore · Jun 18, 2024 · 8b098ff · 8b098ff
1 parent 07c43d4
commit 8b098ff
Show file tree

Hide file tree

Showing 19 changed files with 2,223 additions and 149 deletions.
diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-d08babab
+1dc31dd5
diff --git a/index.html b/index.html
@@ -144,6 +144,10 @@
         <li>
     <a class="dropdown-item" href="./workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/search.json b/search.json
diff --git a/sessions/1_intro_run_nf.html b/sessions/1_intro_run_nf.html
@@ -144,6 +144,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/sessions/2_nf_dev_intro.html b/sessions/2_nf_dev_intro.html
@@ -144,6 +144,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>
@@ -275,8 +279,8 @@ <h3 class="anchored" data-anchor-id="workshop-schedule">Workshop schedule</h3>
 <td>12th Jun 2024</td>
 </tr>
 <tr class="even">
-<td>Working with Nextflow Built-in Functions</td>
-<td>Introduction to nextflow operators, metadata propagation, grouping, and splitting</td>
+<td>Working with Nextflow Built-in Functions <a href="../workshops/6.1_operators.html">operators</a> [metadata] <a href="../workshops/8.1_scatter_gather_output.html">output-scatter-gather</a></td>
+<td>Introduction to nextflow operators, metadata propagation, scatter, and gather</td>
 <td>19th Jun 2024</td>
 </tr>
 </tbody>

diff --git a/sitemap.xml b/sitemap.xml
@@ -2,58 +2,62 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/sessions/2_nf_dev_intro.html</loc>
-    <lastmod>2024-06-18T14:54:38.961Z</lastmod>
+    <lastmod>2024-06-18T17:57:28.085Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/index.html</loc>
-    <lastmod>2024-06-18T14:54:38.132Z</lastmod>
+    <lastmod>2024-06-18T17:57:27.250Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/2.3_tips_and_tricks.html</loc>
-    <lastmod>2024-06-18T14:54:36.432Z</lastmod>
+    <lastmod>2024-06-18T17:57:25.584Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/6.1_operators.html</loc>
-    <lastmod>2024-06-18T14:54:35.497Z</lastmod>
+    <lastmod>2024-06-18T17:57:24.652Z</lastmod>
   </url>
   <url>
-    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/4.1_modules.html</loc>
-    <lastmod>2024-06-18T14:54:33.932Z</lastmod>
+    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/8.1_scatter_gather_output.html</loc>
+    <lastmod>2024-06-18T17:57:23.110Z</lastmod>
   </url>
   <url>
-    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/4.1_draft_future_sess.html</loc>
-    <lastmod>2024-06-18T14:54:32.284Z</lastmod>
+    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/2.2_troubleshooting.html</loc>
+    <lastmod>2024-06-18T17:57:21.650Z</lastmod>
   </url>
   <url>
-    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/1.1_intro_nextflow.html</loc>
-    <lastmod>2024-06-18T14:54:30.435Z</lastmod>
+    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/5.1_nf_core_template.html</loc>
+    <lastmod>2024-06-18T17:57:20.502Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/3.1_creating_a_workflow.html</loc>
-    <lastmod>2024-06-18T14:54:29.766Z</lastmod>
+    <lastmod>2024-06-18T17:57:18.440Z</lastmod>
   </url>
   <url>
-    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/5.1_nf_core_template.html</loc>
-    <lastmod>2024-06-18T14:54:31.887Z</lastmod>
+    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/1.1_intro_nextflow.html</loc>
+    <lastmod>2024-06-18T17:57:19.115Z</lastmod>
   </url>
   <url>
-    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/2.2_troubleshooting.html</loc>
-    <lastmod>2024-06-18T14:54:33.050Z</lastmod>
+    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/4.1_draft_future_sess.html</loc>
+    <lastmod>2024-06-18T17:57:20.937Z</lastmod>
+  </url>
+  <url>
+    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/4.1_modules.html</loc>
+    <lastmod>2024-06-18T17:57:22.515Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/1.2_intro_nf_core.html</loc>
-    <lastmod>2024-06-18T14:54:34.745Z</lastmod>
+    <lastmod>2024-06-18T17:57:23.910Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/00_setup.html</loc>
-    <lastmod>2024-06-18T14:54:35.926Z</lastmod>
+    <lastmod>2024-06-18T17:57:25.093Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/2.1_customise_and_run.html</loc>
-    <lastmod>2024-06-18T14:54:37.766Z</lastmod>
+    <lastmod>2024-06-18T17:57:26.880Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/sessions/1_intro_run_nf.html</loc>
-    <lastmod>2024-06-18T14:54:38.554Z</lastmod>
+    <lastmod>2024-06-18T17:57:27.669Z</lastmod>
   </url>
 </urlset>
diff --git a/workshops/00_setup.html b/workshops/00_setup.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/1.1_intro_nextflow.html b/workshops/1.1_intro_nextflow.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/1.2_intro_nf_core.html b/workshops/1.2_intro_nf_core.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/2.1_customise_and_run.html b/workshops/2.1_customise_and_run.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/2.2_troubleshooting.html b/workshops/2.2_troubleshooting.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/2.3_tips_and_tricks.html b/workshops/2.3_tips_and_tricks.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/3.1_creating_a_workflow.html b/workshops/3.1_creating_a_workflow.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/4.1_draft_future_sess.html b/workshops/4.1_draft_future_sess.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/4.1_modules.html b/workshops/4.1_modules.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/5.1_nf_core_template.html b/workshops/5.1_nf_core_template.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/6.1_operators.html b/workshops/6.1_operators.html
@@ -178,6 +178,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/6.1_operators.html" rel="" target="">
  <span class="dropdown-text">Nextflow Operators</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/8.1_scatter_gather_output.html" rel="" target="">
+ <span class="dropdown-text">Output, scatter, and Gather</span></a>
   </li>  
     </ul>
   </li>