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PMCC-BioinformaticsCore · Jun 4, 2024 · d4a80ea · d4a80ea
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-338f3e2a
+25e786e2
diff --git a/index.html b/index.html
@@ -132,6 +132,10 @@
         <li>
     <a class="dropdown-item" href="./workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
     </ul>
   </li>
@@ -205,7 +209,7 @@ <h3 class="anchored" data-anchor-id="current-and-future-workshop-sessions">Curre
 <td>29th May 2024</td>
 </tr>
 <tr class="even">
-<td>To-be-added</td>
+<td><a href="./sessions/2_nf_dev_intro.html">Developing Modularised Workflows</a></td>
 <td>Introduction to developing bioinformatics workflow with Nextflow (Part2)</td>
 <td>5th Jun 2024</td>
 </tr>

diff --git a/search.json b/search.json
diff --git a/sessions/1_intro_run_nf.html b/sessions/1_intro_run_nf.html
@@ -132,6 +132,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
     </ul>
   </li>

diff --git a/sessions/2_nf_dev_intro.html b/sessions/2_nf_dev_intro.html
@@ -132,6 +132,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
     </ul>
   </li>
@@ -187,13 +191,13 @@ <h3 class="anchored" data-anchor-id="course-presenters">Course Presenters</h3>
 <ul>
 <li>Richard Lupat, Bioinformatics Core Facility</li>
 <li>Miriam Yeung, Cancer Genomics Translational Research Centre</li>
+<li>Song Li, Bioinformatics Core Facility</li>
 </ul>
 </section>
 <section id="course-helpers" class="level3">
 <h3 class="anchored" data-anchor-id="course-helpers">Course Helpers</h3>
 <ul>
 <li>Sanduni Rajapaksa, Research Computing Facility</li>
-<li>Song Li, Bioinformatics Core Facility</li>
 </ul>
 </section>
 <section id="prerequisites" class="level3">
@@ -253,7 +257,7 @@ <h3 class="anchored" data-anchor-id="workshop-schedule">Workshop schedule</h3>
 <td>29th May 2024</td>
 </tr>
 <tr class="even">
-<td>Developing Reusable Workflows</td>
+<td><a href="../workshops/4_1_modules.html">Developing Modularised Workflows</a></td>
 <td>Introduction to modules imports, sub-workflows, setting up test-profile, and common useful groovy functions</td>
 <td>5th Jun 2024</td>
 </tr>

diff --git a/sitemap.xml b/sitemap.xml
@@ -2,46 +2,50 @@
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-    <lastmod>2024-05-29T01:20:37.648Z</lastmod>
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+    <lastmod>2024-06-04T18:11:26.090Z</lastmod>
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diff --git a/workshops/00_setup.html b/workshops/00_setup.html
@@ -166,6 +166,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
     </ul>
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diff --git a/workshops/1.1_intro_nextflow.html b/workshops/1.1_intro_nextflow.html
@@ -166,6 +166,10 @@
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     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
     </ul>
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diff --git a/workshops/1.2_intro_nf_core.html b/workshops/1.2_intro_nf_core.html
@@ -166,6 +166,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
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diff --git a/workshops/2.1_customise_and_run.html b/workshops/2.1_customise_and_run.html
@@ -166,6 +166,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
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diff --git a/workshops/2.2_troubleshooting.html b/workshops/2.2_troubleshooting.html
@@ -166,6 +166,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
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diff --git a/workshops/2.3_tips_and_tricks.html b/workshops/2.3_tips_and_tricks.html
@@ -166,6 +166,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
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diff --git a/workshops/3.1_creating_a_workflow.html b/workshops/3.1_creating_a_workflow.html
@@ -166,6 +166,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
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diff --git a/workshops/4.1_draft_future_sess.html b/workshops/4.1_draft_future_sess.html
@@ -166,6 +166,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/3.1_creating_a_workflow.html" rel="" target="">
  <span class="dropdown-text">Creating a workflow</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
+ <span class="dropdown-text">Modularisation</span></a>
   </li>  
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