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@PNNL-CompBio

Computational Biology @Pacific Northwest National Laboratory

This site is for repositories for computational biology work performed at the Pacific Northwest National Laboratory, a Department of Energy National Laboratory.

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  1. 3D_Scaffold 3D_Scaffold Public

    Python 25 4

  2. decomprolute decomprolute Public

    A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.

    Common Workflow Language 16 5

  3. Snekmer Snekmer Public

    Pipeline to apply encoded Kmer analysis to protein sequences

    Python 16 2

  4. coderdata coderdata Public

    Automation scripts and benchmark dataset package for cancer drug prediction deep learning models.

    Jupyter Notebook 15 3

  5. ML_UVvisModels ML_UVvisModels Public

    Jupyter Notebook 13 1

  6. pf-gnn_pli pf-gnn_pli Public

    Python 12 5

Repositories

Showing 10 of 91 repositories
  • coderdata Public

    Automation scripts and benchmark dataset package for cancer drug prediction deep learning models.

    Jupyter Notebook 15 3 45 (1 issue needs help) 2 Updated Apr 7, 2025
  • spammR Public

    Spatial Analysis of Multiomics Measurement in R

    HTML 6 0 8 0 Updated Apr 1, 2025
  • PythonCyc Public Forked from ecocyc/PythonCyc
    Python 0 MIT 4 0 0 Updated Mar 28, 2025
  • cNFDrugScreening Public

    This repository manages the code to analyze the results of drug screens in cNF organoids together with omics measurements of the tumor data.

    Python 0 BSD-2-Clause 0 1 0 Updated Mar 21, 2025
  • Snekmer Public

    Pipeline to apply encoded Kmer analysis to protein sequences

    Python 16 BSD-3-Clause 2 27 5 Updated Mar 7, 2025
  • bmdrc Public

    Python library for the calculation of benchmark dose response curves

    Jupyter Notebook 2 BSD-2-Clause 1 0 0 Updated Feb 27, 2025
  • srpAnalytics Public

    This repository contains the code necessary to process any new data for the Superfund Research Program Analytics Portal.

    R 5 1 5 0 Updated Feb 20, 2025
  • panSEA Public

    Multi-omic Set Enrichment Analysis

    R 0 MIT 0 0 0 Updated Feb 5, 2025
  • amlresistancenetworks Public
    R 3 2 3 0 Updated Feb 4, 2025
  • MPNST_Chr8 Public
    R 0 MIT 0 0 0 Updated Jan 26, 2025
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