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improve logging message when vcf already exists #570

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improve logging message when vcf already exists #570

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4 changes: 2 additions & 2 deletions scripts/gridss
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Original file line number Diff line number Diff line change
Expand Up @@ -1196,7 +1196,7 @@ if [[ $do_call == true ]] ; then
&& $rmcmd $prefix.allocated.vcf \
; } 1>&2 2>> $logfile
else
write_status "Skipping variant calling $output_vcf"
write_status "Skipping variant calling as $output_vcf already exists."
fi
write_status "Complete calling $output_vcf"
else
Expand All @@ -1206,4 +1206,4 @@ if [[ -f $logfile ]] ; then
write_status "Run complete with $(grep WARNING $logfile | wc -l) warnings and $(grep ERROR $logfile | wc -l) errors."
fi
trap - EXIT
exit 0 # success!
exit 0 # success!