2.2.3
Bug fix and QOL improvement release
- Added friendly error message if specified BLACKLIST file does not exist
- #199 AnnotateUntemplatedSequence no longer hangs if there are no records to annotate
- #202 Added gridss program group header to GRIDSS generated BAMs
- Added GRIDSS version number to VCF header
- #213 Excluding local assembly anchoring from SC calculation so SC field can be used for variant linking purposes
- Added ASC attribute
- #205 fixed ASSEMBLY_ONLY filter reported for variants with indel support but not SR/RP support
- Added error message when input and output VCFs are the same file
- AnnotateUntemplatedSequence now only writes BEALN field if it does not already exist (useful for viral annotations)
- Fixed some typos and descriptions
- Added max clique telemetry. Enable by specifying a configuration file with
visualisation.maxCliqueTelemetry = true
.