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2.5.0
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@d-cameron d-cameron released this 28 Jul 12:48
· 777 commits to master since this release
v2.5.0
38a2221

Improves worst-case assembly performance. Worse-case runtime and memory usage should be much improved.

  • Added new safety check to prevent assembly stalling
  • Reduced peak memory by downsampling each read instead of loading entire region then downsampling
  • Tighter default assembly configuration parameters (reduces active size of assembly graph)
  • Exporting BED files containins assembly timeouts/safety abort regions to assembly working directory
  • Additional assembly runtime optimisations
  • Improved usability of wrapper script #220 #217.
    • Better error messages and more environment checks (e.g. check for java 1.8+)
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