Skip to content

Issues: PavlidisLab/Gemma

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

310 Open 810 Closed
310 Open 810 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Indicate if a characteristic, treatment or factor value is inherited enhancement Enhance the code or user experience rest-api Issues or pull requests involving the RESTful API
#1347 opened Mar 28, 2025 by arteymix
Include build information when reporting errors to Slack enhancement Enhance the code or user experience
#1346 opened Mar 27, 2025 by arteymix 1.32.0
@arteymix
Deal with all single-cell assays missing values in DEA
#1344 opened Mar 21, 2025 by arteymix 1.32.0
@arteymix
3
Detect total v.s. poly-A focused RNA assays enhancement Enhance the code or user experience low priority
#1343 opened Mar 18, 2025 by arteymix 1.32.0
4
Boxplot of cell-level expression by gene and contrast gui Issues or pull requests involving the Web UI single cell Issues related to single-cell data support
#1333 opened Feb 8, 2025 by arteymix 1.32.0
@arteymix
1
Updating user details is broken bug gui Issues or pull requests involving the Web UI low priority
#1331 opened Feb 8, 2025 by arteymix
@arteymix
Support streaming vectors in getDataMatrix and getRawDataMatrix cli Issues affecting the CLI enhancement Enhance the code or user experience low priority performance rest-api Issues or pull requests involving the RESTful API
#1328 opened Feb 4, 2025 by arteymix
One-way ANOVA description should wrap after a certain width enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI
#1327 opened Feb 3, 2025 by arteymix
@oganm
FTP downloader is brittle for large file downloads from GEO bug
#1326 opened Jan 31, 2025 by arteymix
Some terms produce very slow ontology queries annotations performance
#1325 opened Jan 31, 2025 by arteymix
@arteymix
Experimental design files are not generated when missing and accessed from the REST API bug rest-api Issues or pull requests involving the RESTful API
#1321 opened Jan 27, 2025 by arteymix
1
Restrict owning entity when querying characteristics enhancement Enhance the code or user experience low priority
#1320 opened Jan 25, 2025 by arteymix
1
Split single-cell data in SplitExperimentService low priority single cell Issues related to single-cell data support
#1318 opened Jan 23, 2025 by arteymix
Support subsetting by more than one factor enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support workaroud Indicate that a workaround exists or is in effect
#1313 opened Dec 24, 2024 by arteymix
3 tasks
1
Load cell type assignment directly from GEO supplementary files enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support
#1310 opened Dec 20, 2024 by arteymix
1
Prepopulating a factor from sample characteristics is awfully slow low priority performance
#1308 opened Dec 20, 2024 by arteymix
Some series files from GEO FTP server have invalid UTF-8 characters bug low priority
#1303 opened Dec 10, 2024 by arteymix
1
"Needs attention" remains unchecked low priority
#1301 opened Dec 3, 2024 by xnrxng
ConcurrentModificationException when altering ACLs bug needs confirmation Issues that need to be confirmed or reliably reproduced
#1299 opened Dec 3, 2024 by arteymix
@arteymix
column sorting in DE visualizations can be wrong bug gui Issues or pull requests involving the Web UI
#1296 opened Nov 26, 2024 by ppavlidis
1
Automation of "subset" tag low priority
#1294 opened Nov 21, 2024 by xnrxng
8
Tag subsets with a copy of the factor value's characteristics when subsetting enhancement Enhance the code or user experience low priority
#1292 opened Nov 15, 2024 by arteymix
1
eBayes fails on dataset bug
#1291 opened Nov 14, 2024 by ppavlidis
Make selection of arbitirary baselines for DEA deterministic and/or add more rules. enhancement Enhance the code or user experience
#1290 opened Nov 14, 2024 by ppavlidis
6
Filter cells to be included in a pseudo-bulk low priority single cell Issues related to single-cell data support
#1287 opened Nov 5, 2024 by arteymix 1.32.0
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.