[Integration Testing] PEcAn Docker Stack Run : Single Site, Single Model #1

	name : Sipnet Model Run
	on :
	pull_request:

	# allow manual triggering
	workflow_dispatch:

	schedule:
	# run Thursday 4:30 AM UTC
	- cron: '30 4 * * 4'
	jobs:
	test:
	runs-on: ubuntu-20.04

	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	container:
	image: pecan/base:develop

	steps:
	- name: Checkout source code
	uses: actions/checkout@v4

	- name: Set up Docker Compose
	run: \|
	sudo apt-get update
	sudo apt-get -y install docker-compose

	- name: Build Containers
	run: \|
	cp docker/env.example .env
	echo "COMPOSE_PROJECT_NAME=pecan" >> .env
	echo "PECAN_VERSION=develop" >> .env
	echo "UID=$(id -u)" >> .env
	echo "GID=$(id -g)" >> .env
	docker-compose up -d postgres
	docker run --rm --network pecan_pecan pecan/db

	docker-compose run bety user guestuser guestuser "Guest User" [email protected] 4 4
	docker-compose run bety user carya illinois "Carya Demo User" [email protected] 1 1

	docker run --rm --network pecan_pecan --volume pecan_pecan:/data --env FQDN=docker pecan/data:develop
	docker run --rm --network pecan_pecan --volume pecan_pecan:/data pecan/data:develop chown -R "$(id -u).$(id -g)" /data

	docker run --user="$(id -u)" --rm --network pecan_pecan --volume pecan_pecan:/data --env FQDN=docker pecan/data:develop

	- name: Run required containers
	run: \|
	docker-compose up pecan bety sipnet rstudio -d

	- name: Check if containers are running # This will be updated soon to a loop
	run: \|
	docker ps
	sleep 50

	- name: Run SIPNET
	run: \|
	docker exec --workdir /pecan/tests pecan-rstudio-1 R CMD ../web/workflow.R --settings test.xml

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