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Update met2model, model2netcdf, .Rd files
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,28 @@ | ||
| model | ||
| { | ||
| for (k in 1:28){ | ||
| Y[k] ~ dnorm( Z[k] , tau.y[k]) | ||
| Z[k] <- beta.o | ||
| tau.y[k] <- prec.y*n[k] | ||
| u1[k] <- n[k]/2 | ||
| u2[k] <- n[k]/(2*prec.y) | ||
| obs.prec[k] ~ dgamma(u1[k], u2[k]) | ||
| } | ||
| # beta.trt[1] <- 0 | ||
| # for ( j in 2:1){ | ||
| # beta.trt[j] ~ dnorm(0, tau.trt) | ||
| # } | ||
| # for (g in 1:1){ | ||
| # beta.site[g] ~ dnorm(0, tau.site) | ||
| # } | ||
| # beta.ghs[1] <- 0 | ||
| # beta.ghs[2] ~ dnorm(0, 0.01) | ||
| beta.o ~ dunif (0, 40)#BBB | ||
| # tau.site ~ dgamma(0.01, 0.01) | ||
| # tau.trt ~ dgamma(0.01, 0.01) | ||
| prec.y ~ dgamma(0.01, 0.01) | ||
| #prec.y ~ dgamma(0.001, 0.001) | ||
| # sd.site <- 1 / sqrt(tau.site) | ||
| sd.y <- 1 / sqrt(prec.y) | ||
| # sd.trt <- 1 / sqrt(tau.trt) | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,28 @@ | ||
| model | ||
| { | ||
| for (k in 1:47){ | ||
| Y[k] ~ dnorm( Z[k] , tau.y[k]) | ||
| Z[k] <- beta.o + beta.ghs[ghs[k]] | ||
| tau.y[k] <- prec.y*n[k] | ||
| u1[k] <- n[k]/2 | ||
| u2[k] <- n[k]/(2*prec.y) | ||
| obs.prec[k] ~ dgamma(u1[k], u2[k]) | ||
| } | ||
| # beta.trt[1] <- 0 | ||
| # for ( j in 2:1){ | ||
| # beta.trt[j] ~ dnorm(0, tau.trt) | ||
| # } | ||
| # for (g in 1:1){ | ||
| # beta.site[g] ~ dnorm(0, tau.site) | ||
| # } | ||
| beta.ghs[1] <- 0 | ||
| beta.ghs[2] ~ dnorm(0, 0.01) | ||
| beta.o ~ dlnorm (1.89, 2.68744961031981)#BBB | ||
| # tau.site ~ dgamma(0.01, 0.01) | ||
| # tau.trt ~ dgamma(0.01, 0.01) | ||
| prec.y ~ dgamma(0.01, 0.01) | ||
| #prec.y ~ dgamma(0.001, 0.001) | ||
| # sd.site <- 1 / sqrt(tau.site) | ||
| sd.y <- 1 / sqrt(prec.y) | ||
| # sd.trt <- 1 / sqrt(tau.trt) | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,28 @@ | ||
| model | ||
| { | ||
| for (k in 1:12){ | ||
| Y[k] ~ dnorm( Z[k] , tau.y[k]) | ||
| Z[k] <- beta.o | ||
| tau.y[k] <- prec.y*n[k] | ||
| u1[k] <- n[k]/2 | ||
| u2[k] <- n[k]/(2*prec.y) | ||
| obs.prec[k] ~ dgamma(u1[k], u2[k]) | ||
| } | ||
| # beta.trt[1] <- 0 | ||
| # for ( j in 2:1){ | ||
| # beta.trt[j] ~ dnorm(0, tau.trt) | ||
| # } | ||
| # for (g in 1:1){ | ||
| # beta.site[g] ~ dnorm(0, tau.site) | ||
| # } | ||
| # beta.ghs[1] <- 0 | ||
| # beta.ghs[2] ~ dnorm(0, 0.01) | ||
| beta.o ~ dnorm (50.6, 0.573921028466483)#BBB | ||
| # tau.site ~ dgamma(0.01, 0.01) | ||
| # tau.trt ~ dgamma(0.01, 0.01) | ||
| prec.y ~ dgamma(0.01, 0.01) | ||
| #prec.y ~ dgamma(0.001, 0.001) | ||
| # sd.site <- 1 / sqrt(tau.site) | ||
| sd.y <- 1 / sqrt(prec.y) | ||
| # sd.trt <- 1 / sqrt(tau.trt) | ||
| } |
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28
dbfiles/posterior/77000000001/leaf_respiration_rate_m2.model.bug
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,28 @@ | ||
| model | ||
| { | ||
| for (k in 1:10){ | ||
| Y[k] ~ dnorm( Z[k] , tau.y[k]) | ||
| Z[k] <- beta.o | ||
| tau.y[k] <- prec.y*n[k] | ||
| u1[k] <- n[k]/2 | ||
| u2[k] <- n[k]/(2*prec.y) | ||
| obs.prec[k] ~ dgamma(u1[k], u2[k]) | ||
| } | ||
| # beta.trt[1] <- 0 | ||
| # for ( j in 2:1){ | ||
| # beta.trt[j] ~ dnorm(0, tau.trt) | ||
| # } | ||
| # for (g in 1:1){ | ||
| # beta.site[g] ~ dnorm(0, tau.site) | ||
| # } | ||
| # beta.ghs[1] <- 0 | ||
| # beta.ghs[2] ~ dnorm(0, 0.01) | ||
| beta.o ~ dweib (2, 0.0277777777777778)#BBB | ||
| # tau.site ~ dgamma(0.01, 0.0013) | ||
| # tau.trt ~ dgamma(0.01, 0.0013) | ||
| prec.y ~ dgamma(0.01, 0.0013) | ||
| #prec.y ~ dgamma(0.001, 0.001) | ||
| # sd.site <- 1 / sqrt(tau.site) | ||
| sd.y <- 1 / sqrt(prec.y) | ||
| # sd.trt <- 1 / sqrt(tau.trt) | ||
| } |
28 changes: 28 additions & 0 deletions
28
dbfiles/posterior/77000000001/leaf_turnover_rate.model.bug
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,28 @@ | ||
| model | ||
| { | ||
| for (k in 1:15){ | ||
| Y[k] ~ dnorm( Z[k] , tau.y[k]) | ||
| Z[k] <- beta.o | ||
| tau.y[k] <- prec.y*n[k] | ||
| u1[k] <- n[k]/2 | ||
| u2[k] <- n[k]/(2*prec.y) | ||
| obs.prec[k] ~ dgamma(u1[k], u2[k]) | ||
| } | ||
| # beta.trt[1] <- 0 | ||
| # for ( j in 2:1){ | ||
| # beta.trt[j] ~ dnorm(0, tau.trt) | ||
| # } | ||
| # for (g in 1:1){ | ||
| # beta.site[g] ~ dnorm(0, tau.site) | ||
| # } | ||
| # beta.ghs[1] <- 0 | ||
| # beta.ghs[2] ~ dnorm(0, 0.01) | ||
| beta.o ~ dweib (1.37, 0.612617824426684)#BBB | ||
| # tau.site ~ dgamma(0.01, 0.00015) | ||
| # tau.trt ~ dgamma(0.01, 0.00015) | ||
| prec.y ~ dgamma(0.01, 0.00015) | ||
| #prec.y ~ dgamma(0.001, 0.001) | ||
| # sd.site <- 1 / sqrt(tau.site) | ||
| sd.y <- 1 / sqrt(prec.y) | ||
| # sd.trt <- 1 / sqrt(tau.trt) | ||
| } |
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dbfiles/posterior/77000000001/ma.summaryplots.leaf_respiration_rate_m2.pdf
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dbfiles/posterior/77000000001/ma.summaryplots.root_respiration_rate.pdf
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