[WIP] Run meta analysis for a settings file API #3053
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Description
This API
/api/ma/run
will run a meta analysis if a settings file is provided in the body of the request. The settings file should me send as xml.Upon successful run of the meta analysis the response will consist the data from the
post.distns.MA.Rdata
file from the output directory as a list.Sample request on Postman
![image](https://user-images.githubusercontent.com/55532999/194581360-12f8c0aa-de27-4960-b079-df15d6b7a591.png)
Sample settings file
<?xml version="1.0"?> <info> <notes/> <userid>-1</userid> <username/> <date>2022/09/29 15:46:00 +0000</date> </info> <outdir>/data/workflows/PEcAn_99000000004</outdir> <database> <bety> <user>bety</user> <password>bety</password> <host>postgres</host> <port>5432</port> <dbname>bety</dbname> <driver>PostgreSQL</driver> <write>true</write> </bety> <dbfiles>/data/dbfiles</dbfiles> </database> <pfts> <pft> <name>temperate.coniferous</name> </pft> </pfts> <meta.analysis> <iter>3000</iter> <random.effects> <on>FALSE</on> <use_ghs>TRUE</use_ghs> </random.effects> </meta.analysis> <ensemble> <size>1</size> <variable>NPP</variable> <samplingspace> <parameters> <method>uniform</method> </parameters> <met> <method>sampling</method> </met> </samplingspace> </ensemble> <model> <id>1000000014</id> </model> <workflow> <id>99000000004</id> </workflow> <run> <site> <id>772</id> <met.start>1999-01-01 00:00:00</met.start> <met.end>2003-12-31 00:00:00</met.end> </site> <inputs> <met> <id>5000000006</id> </met> </inputs> <start.date>2000/01/01</start.date> <end.date>2000/12/31</end.date> </run> <host> <name>localhost</name> <rabbitmq> <uri>amqp://guest:guest@rabbitmq/%2F</uri> <queue>SIPNET_r136</queue> </rabbitmq> </host>
Sample Output of the API
{ "status": "Meta Analysis ran successfully", "data": [ { "distn": "beta", "parama": 2.63, "paramb": 6.52, "n": 0, "_row": "growth_resp_factor" }, { "distn": "gamma", "parama": 4599.0942, "paramb": 13859.064, "n": 363, "_row": "leaf_turnover_rate" }, { "distn": "gamma", "parama": 130531.937, "paramb": 7335.3038, "_row": "root_respiration_rate" }, { "distn": "norm", "parama": 0.6032, "paramb": 0.0322, "_row": "root_turnover_rate" }, { "distn": "norm", "parama": 16.8391, "paramb": 0.1774, "_row": "Amax" }, { "distn": "norm", "parama": 1.4098, "paramb": 0.0252, "_row": "leaf_respiration_rate_m2" }, { "distn": "gamma", "parama": 1571.2799, "paramb": 303.327, "n": 455, "_row": "SLA" }, { "distn": "norm", "parama": 50.4784, "paramb": 0.182, "n": 291, "_row": "leafC" }, { "distn": "norm", "parama": 0, "paramb": 3, "_row": "Vm_low_temp" }, { "distn": "unif", "parama": 0.6, "paramb": 0.9, "_row": "AmaxFrac" }, { "distn": "unif", "parama": 5, "paramb": 40, "_row": "psnTOpt" }, { "distn": "unif", "parama": 0, "paramb": 100, "_row": "stem_respiration_rate" }, { "distn": "unif", "parama": 0.38, "paramb": 0.62, "_row": "extinction_coefficient" }, { "distn": "unif", "parama": 4, "paramb": 27, "_row": "half_saturation_PAR" }, { "distn": "unif", "parama": 0.01, "paramb": 0.25, "_row": "dVPDSlope" }, { "distn": "unif", "parama": 1, "paramb": 3, "_row": "dVpdExp" }, { "distn": "unif", "parama": 1.4, "paramb": 2.6, "_row": "veg_respiration_Q10" }, { "distn": "unif", "parama": 1.4, "paramb": 5, "_row": "fine_root_respiration_Q10" }, { "distn": "unif", "parama": 1.4, "paramb": 5, "_row": "coarse_root_respiration_Q10" } ] }
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