AGU 2017

Fixes

• Updated models/ed/data/pftmapping.csv to include two new BETYdb PFTs
• Simple fix to models/ed/R/write.configs.ed.R to properly align pss and css file prefix
• Fixed issue #1752 by updating the site.lst() function to include site.id=site$id instead of site.id=site, as site is an object not just the id
• Update to PEcAn.ED2::met2model.ED2 to fix issue with rhdf5::h5write. Bug fix to #1742
• Fixed write.config.xml.ED2 parsing of data/history* files
• PEcAn.utils now lazy-loads data for faster execution of functions that consult lookup tables, especially to_ncvar.
• Fixed incorrect PEcAn.BIOCRO daily and yearly results: Was calculating every row from whole simulation instead of that day (#1738)

Added

• New Dockerfile to create PEcAN specific container for SIPNET.

Removed

• Removed PEcAn.utils::model2netcdf, which has been deprecated since PEcAn 1.3.7. Use model2netcdf.<YOURMODEL> in the appropriate model package instead.

Changed

• Major namespace cleanup in the PEcAn.utils package. It now loads more quietly and is much less likely to mask functions in a package you loaded earlier.
• Moved many functions from PEcAn.utils into other PEcAn packages. The PEcAn.utils versions still work with a deprecation warning, but will be removed in next release.
  • listToXml and SafeList moved to PEcAn.settings
  • fqdn moved to PEcAn.remote
• PEcAnRTM: Removed effective sample size normalization from likelihood calculation. It was giving weird results.