Prepare for 1.1.0 release (#311)

* Prepare for 1.1.0.

* Add reference to README.

* Add badges to README.

CITATION.cff

@@ -103,5 +103,5 @@ keywords:
   - BIDS
   - Neuroimaging
 license: MIT
-version: 1.0.2
-date-released: '2023-09-07'
+version: 1.1.0
+date-released: '2024-04-02'

HISTORY.rst

@@ -2,6 +2,38 @@
 History
 =======
 
+1.1.0 (2024-04-02)
+------------------
+
+🎉 Exciting New Features
+````````````````````````
+
+* Make CLI commands available as `cubids <command>` by @tsalo in https://github.com/PennLINC/CuBIDS/pull/268
+* Add ASL fields to config by @tsalo in https://github.com/PennLINC/CuBIDS/pull/282
+
+🐛 Bug Fixes
+````````````
+
+* Remove `--ignore_subject_consistency` param from `cubids validate` by @tsalo in https://github.com/PennLINC/CuBIDS/pull/276
+
+Other Changes
+`````````````
+
+* Use black and isort to autoformat the main package by @tsalo in https://github.com/PennLINC/CuBIDS/pull/266
+* Reorganize packaging and hopefully fix tests by @tsalo in https://github.com/PennLINC/CuBIDS/pull/267
+* Move notebooks into example gallery by @tsalo in https://github.com/PennLINC/CuBIDS/pull/278
+* Drop jinja and wrapt from dependencies and pin other requirements by @tsalo in https://github.com/PennLINC/CuBIDS/pull/295
+* Run Pytests across all supported Python versions by @tsalo in https://github.com/PennLINC/CuBIDS/pull/279
+* Improve documentation by @tsalo in https://github.com/PennLINC/CuBIDS/pull/290
+
+New Contributors
+````````````````
+
+* @tsalo made their first contribution in https://github.com/PennLINC/CuBIDS/pull/266
+* @dependabot made their first contribution in https://github.com/PennLINC/CuBIDS/pull/293
+
+**Full Changelog**: https://github.com/PennLINC/CuBIDS/compare/1.0.2...1.0.3
+
 1.0.2 (2023-09-07)
 ------------------
 

README.rst

@@ -4,14 +4,36 @@ CuBIDS: Curation of BIDS
 
 .. image:: https://img.shields.io/pypi/v/cubids.svg
     :target: https://pypi.python.org/pypi/cubids
+    :alt: Latest Version
 
-.. image:: https://circleci.com/gh/PennLINC/CuBIDS.svg?style=svg
-    :target: https://circleci.com/gh/PennLINC/CuBIDS
+.. image:: https://img.shields.io/badge/Source%20Code-pennlinc%2Fcubids-purple
+   :target: https://github.com/PennLINC/CuBIDS
+   :alt: GitHub Repository
 
 .. image:: https://readthedocs.org/projects/cubids/badge/?version=latest
     :target: https://cubids.readthedocs.io/en/latest/?badge=latest
     :alt: Documentation Status
 
+.. image:: https://circleci.com/gh/PennLINC/CuBIDS.svg?style=svg
+    :target: https://circleci.com/gh/PennLINC/CuBIDS
+    :alt: Test Status
+
+.. image:: https://codecov.io/gh/PennLINC/CuBIDS/branch/main/graph/badge.svg
+   :target: https://app.codecov.io/gh/PennLINC/CuBIDS/tree/main
+   :alt: Codecov
+
+.. image:: https://img.shields.io/badge/NeuroImage-10.1016%2Fj.neuroimage.2022.119609-purple
+   :target: https://doi.org/10.1016/j.neuroimage.2022.119609
+   :alt: Publication DOI
+
+.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.6514881.svg
+   :target: https://doi.org/10.5281/zenodo.6514881
+   :alt: Zenodo DOI
+
+.. image:: https://img.shields.io/badge/License-MIT-green
+   :target: https://opensource.org/licenses/MIT
+   :alt: License
+
 
 About
 -----
@@ -35,3 +57,17 @@ in the process of preparing BIDS data for successful preprocessing and analysis
 
 For full documentation, please visit our
 `ReadTheDocs <https://cubids.readthedocs.io/en/latest/?badge=latest>`_.
+
+
+Citing CuBIDS
+-------------
+
+If you use CuBIDS in your research, please cite the following paper:
+
+    Covitz, S., Tapera, T. M., Adebimpe, A., Alexander-Bloch, A. F., Bertolero, M. A., Feczko, E.,
+    ... & Satterthwaite, T. D. (2022).
+    Curation of BIDS (CuBIDS): A workflow and software package for streamlining reproducible curation of large BIDS datasets.
+    NeuroImage, 263, 119609.
+    doi:10.1016/j.neuroimage.2022.119609.
+
+Please also cite the Zenodo DOI for the version you used.