Write out QSIRecon pipeline-wise reports

[tsalo]

Closes PennLINC/qsirecon#13.

Changes proposed in this pull request

• Collect list of QSIRecon output directories and write out a separate HTML report to each.

[tsalo]

I need to test this but I'm not sure how best to do that.

EDIT: Waiting on #763 seems to be the way to go.

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 0% with 13 lines in your changes missing coverage. Please review.

Please upload report for BASE (master@87f0206). Learn more about missing BASE report.

Files	Patch %	Lines
qsiprep/cli/run.py	0.00%	13 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff            @@
##             master     PennLINC/qsiprep#761   +/-   ##
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  Coverage          ?   29.76%           
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  Files             ?       97           
  Lines             ?    14585           
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  Hits              ?     4341           
  Misses            ?    10118           
  Partials          ?      126           

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[tsalo]

I'm not seeing new HTML reports, so I must have messed something up.

[tsalo]

@mattcieslak should the reconstruction pipelines be generating any figures? The reports are basically empty (minus the boilerplate that I still have to figure out).

[tsalo]

Closing in favor of PennLINC/qsirecon#7.