Address style issues.

PennLINC · Aug 9, 2024 · b30588c · b30588c
1 parent 131b085
commit b30588c
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Showing 3 changed files with 9 additions and 4 deletions.
diff --git a/qsirecon/cli/parser.py b/qsirecon/cli/parser.py
@@ -173,7 +173,7 @@ def _bids_filter(value, parser):
     parser.add_argument(
         "analysis_level",
         choices=["participant"],
-        help='Processing stage to be run, only "participant" in the case of ' "QSIRecon (for now).",
+        help='Processing stage to be run, only "participant" in the case of QSIRecon (for now).',
     )
 
     g_bids = parser.add_argument_group("Options for filtering BIDS queries")

diff --git a/qsirecon/cli/workflow.py b/qsirecon/cli/workflow.py
@@ -47,7 +47,6 @@ def build_workflow(config_file, exec_mode, retval):
     from .. import config
     from ..utils.misc import check_deps
     from ..viz.reports import generate_reports
-    from ..workflows.base import init_qsirecon_wf
     from ..workflows.recon import init_qsirecon_wf
 
     config.load(config_file)

diff --git a/qsirecon/interfaces/anatomical.py b/qsirecon/interfaces/anatomical.py
@@ -144,7 +144,10 @@ def _run_interface(self, runtime):
             "%s/sub-%s*_from-T*w_to-MNI152NLin2009cAsym_mode-image_xfm.h5" % (anat_root, sub),
         )
         if not self.inputs.infant_mode:
-            self._results["template_image"] = pkgrf("qsirecon", "data/mni_1mm_t1w_lps_brain.nii.gz")
+            self._results["template_image"] = pkgrf(
+                "qsirecon",
+                "data/mni_1mm_t1w_lps_brain.nii.gz",
+            )
         else:
             self._results["template_image"] = pkgrf(
                 "qsirecon", "data/mni_1mm_t1w_lps_brain_infant.nii.gz"
@@ -510,7 +513,10 @@ def _run_interface(self, runtime):
         if self.inputs.template_name in KNOWN_TEMPLATES or self.inputs.infant_mode:
             if not self.inputs.infant_mode:
                 ref_img = pkgr("qsirecon", "data/mni_1mm_%s_lps.nii.gz" % contrast_name)
-                ref_img_brain = pkgr("qsirecon", "data/mni_1mm_%s_lps_brain.nii.gz" % contrast_name)
+                ref_img_brain = pkgr(
+                    "qsirecon",
+                    "data/mni_1mm_%s_lps_brain.nii.gz" % contrast_name,
+                )
                 ref_img_mask = pkgr("qsirecon", "data/mni_1mm_t1w_lps_brainmask.nii.gz")
             else:
                 ref_img = pkgr("qsirecon", "data/mni_1mm_%s_lps_infant.nii.gz" % contrast_name)