1.0.0

What's Changed

🛠 Breaking Changes

• Reorganize atlas management based on XCP-D and BIDS-Atlas by @tsalo in #123
• Rename --freesurfer-input to --fs-subjects-dir by @tsalo in #152
• [ENH] Read session-specific anat data by @mattcieslak in #151
• Remove underscore versions of all parameters by @tsalo in #159
• Make connectivity field names compatible with MATLAB by @tsalo in #166

🎉 Exciting New Features

• Pass DWI file metadata to reconstruction workflows by @tsalo in #154
• Add HBCD Release1 recon workflow by @mattcieslak in #169
• Support output spaces to arbitrary templates and cohorts by @mattcieslak in #184

🐛 Bug Fixes

• Add missing filename patterns by @tsalo in #131
• Fix infant anatomical ingression by @tsalo in #126
• Fix extension in ds_fs_5tt_hsvs by @tsalo in #165
• Fix extension in ds_qsiprep_5tt_hsvs by @tsalo in #172
• Fix space in ds_qsiprep_5tt_hsvs by @tsalo in #175
• Make PlotPeaks robust enough that we don't need --writable-tempfs in singularity/apptainer by @mattcieslak in #174
• Use abspaths for the ODF plotter by @mattcieslak in #182

Other Changes

• [FIX] workflow connection in dsi_studio_gqi by @mattcieslak in #142
• [CI] add hsvs test by @mattcieslak in #136
• [FIX] dsi_studio_gqi workflow connect by @mattcieslak in #146
• [DOC] Minor addition for skipping connectivity matrices step by @chiuhoward in #150
• Add page documenting output structure by @tsalo in #156
• Add information about QSIPrep/QSIRecon releases by @tsalo in #158
• [CI] Add tests for reading pre-1.0 outputs from qsiprep by @mattcieslak in #155
• [ENH] Support outputs from qsiprep 1.0.0rc0 by @mattcieslak in #160
• [FIX] get rid of logging error #145 by @mattcieslak in #161
• Add UKB ingression by @smeisler in #147
• [FIX] set TMPDIR before running plot_peaks by @mattcieslak in #163
• [ENH] match to qsiprep nipype/nireports versions by @mattcieslak in #167
• Add in Val's text for connectivity matrices by @mattcieslak in #173
• Disable test_main in the CI integration tests by @mattcieslak in #177
• Link to NiPreps contributing guidelines by @LuciMoore in #193
• Add a node for selecting specific shells from preprocessed dwis by @mattcieslak in #194
• Add official recon spec for ss3t FOD autotrack by @mattcieslak in #196
• Add Chen version as an option for autotrack by @mattcieslak in #201
• Switch hbcd pipeline back to Chen by @mattcieslak in #202

New Contributors

• @chiuhoward made their first contribution in #150
• @LuciMoore made their first contribution in #193

Full Changelog: 0.23.2...1.0.0