Update concatenation.py

PennLINC · Nov 4, 2024 · fb5a571 · fb5a571
1 parent 4892f35
commit fb5a571
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/xcp_d/utils/concatenation.py b/xcp_d/utils/concatenation.py
@@ -2,6 +2,7 @@
 # vi: set ft=python sts=4 ts=4 sw=4 et:
 """Functions for concatenating scans across runs."""
 
+import os
 from contextlib import suppress
 
 import nibabel as nb
@@ -58,6 +59,4 @@ def concatenate_niimgs(files, out_file):
         concat_preproc_img = concat_imgs(files)
         concat_preproc_img.to_filename(out_file)
     else:
-        import subprocess
-        cmd = ['wb_command', '-cifti-merge', out_file, '-cifti'] + files
-        subprocess.run(cmd, check=True)
+        os.system(f"wb_command -cifti-merge {out_file} -cifti {' -cifti '.join(files)}")