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update task-id #1385

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update task-id #1385

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c412db2
update config.py
shivaram-k Feb 6, 2025
7160476
update parser.py
shivaram-k Feb 6, 2025
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5 changes: 3 additions & 2 deletions xcp_d/cli/parser.py
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Original file line number Diff line number Diff line change
Expand Up @@ -102,11 +102,12 @@ def _build_parser():
'--task_id',
dest='task_id',
action='store',
nargs='*',
help=(
'The name of a specific task to postprocess. '
'The name(s) of specific task(s) to postprocess. '
'By default, all tasks will be postprocessed. '
'If you want to select more than one task to postprocess (but not all of them), '
'you can either run XCP-D with the --task-id parameter, separately for each task, '
'you can provide a space-delimited list of task names with the --task-id parameter, '
'or you can use the --bids-filter-file to specify the tasks to postprocess.'
),
)
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5 changes: 3 additions & 2 deletions xcp_d/config.py
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Original file line number Diff line number Diff line change
Expand Up @@ -91,6 +91,7 @@
import os
from multiprocessing import set_start_method

from bids.utils import listify
from templateflow.conf import TF_LAYOUT

# Disable NiPype etelemetry always
Expand Down Expand Up @@ -421,7 +422,7 @@ class execution(_Config):
participant_label = None
"""List of participant identifiers that are to be preprocessed."""
task_id = None
"""Select a particular task from all available in the dataset."""
"""Select particular tasks from all available in the dataset."""
templateflow_home = _templateflow_home
"""The root folder of the TemplateFlow client."""
work_dir = Path('work').absolute()
Expand Down Expand Up @@ -517,7 +518,7 @@ def _process_value(value):
if cls.task_id:
cls.bids_filters = cls.bids_filters or {}
cls.bids_filters['bold'] = cls.bids_filters.get('bold', {})
cls.bids_filters['bold']['task'] = cls.task_id
cls.bids_filters['bold']['task'] = listify(cls.task_id)

dataset_links = {
'preprocessed': cls.fmri_dir,
Expand Down