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adding easyconfigs: ebGSEA-0.1.0-foss-2022a-R-4.2.1.eb
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PetrKralCZ committed Dec 20, 2023
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49 changes: 49 additions & 0 deletions easybuild/easyconfigs/e/ebGSEA/ebGSEA-0.1.0-foss-2022a-R-4.2.1.eb
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easyblock = 'Bundle'

name = 'ebGSEA'
version = '0.1.0'
versionsuffix = '-R-%(rver)s'

local_commit = 'b307931'

homepage = 'https://github.com/aet21/ebGSEA'
description = """Gene Set Enrichment Analysis is one of the most common tasks in the analysis of omic data,
and is critical for biological interpretation. In the context of Epigenome Wide Association Studies (EWAS),
which typically rank individual cytosines according to the level of differential methylation, enrichment
analysis of biological pathways is challenging due to differences in CpG/probe density between genes."""

toolchain = {'name': 'foss', 'version': '2022a'}

dependencies = [
('R', '4.2.1'),
('R-bundle-Bioconductor', '3.15', versionsuffix),
]

exts_defaultclass = 'RPackage'
exts_default_options = {
'sources': ['%(name)s_%(version)s.tar.gz'],
'source_urls': [
'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive
'https://cran.r-project.org/src/contrib/', # current version of packages
'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages
],
}

exts_list = [
('kpmt', '0.1.0', {
'checksums': ['6342ad02c93bfa7a764d028821bb6115bb8bc8c55b057a5860736cc0e034a295'],
}),
(name, version, {
'source_urls': ['https://github.com/aet21/ebGSEA/raw/%s/' % local_commit],
'checksums': ['a7cb470a884d4455e2754b40bd010b43a0f048e968ab00101d11f91310fab380'],
}),
]

modextrapaths = {'R_LIBS_SITE': ''}

sanity_check_paths = {
'files': [],
'dirs': [name],
}

moduleclass = 'bio'

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