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adding easyconfigs: ebGSEA-0.1.0-foss-2022a-R-4.2.1.eb
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easybuild/easyconfigs/e/ebGSEA/ebGSEA-0.1.0-foss-2022a-R-4.2.1.eb
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easyblock = 'Bundle' | ||
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name = 'ebGSEA' | ||
version = '0.1.0' | ||
versionsuffix = '-R-%(rver)s' | ||
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local_commit = 'b307931' | ||
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homepage = 'https://github.com/aet21/ebGSEA' | ||
description = """Gene Set Enrichment Analysis is one of the most common tasks in the analysis of omic data, | ||
and is critical for biological interpretation. In the context of Epigenome Wide Association Studies (EWAS), | ||
which typically rank individual cytosines according to the level of differential methylation, enrichment | ||
analysis of biological pathways is challenging due to differences in CpG/probe density between genes.""" | ||
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toolchain = {'name': 'foss', 'version': '2022a'} | ||
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dependencies = [ | ||
('R', '4.2.1'), | ||
('R-bundle-Bioconductor', '3.15', versionsuffix), | ||
] | ||
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exts_defaultclass = 'RPackage' | ||
exts_default_options = { | ||
'sources': ['%(name)s_%(version)s.tar.gz'], | ||
'source_urls': [ | ||
'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive | ||
'https://cran.r-project.org/src/contrib/', # current version of packages | ||
'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages | ||
], | ||
} | ||
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exts_list = [ | ||
('kpmt', '0.1.0', { | ||
'checksums': ['6342ad02c93bfa7a764d028821bb6115bb8bc8c55b057a5860736cc0e034a295'], | ||
}), | ||
(name, version, { | ||
'source_urls': ['https://github.com/aet21/ebGSEA/raw/%s/' % local_commit], | ||
'checksums': ['a7cb470a884d4455e2754b40bd010b43a0f048e968ab00101d11f91310fab380'], | ||
}), | ||
] | ||
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modextrapaths = {'R_LIBS_SITE': ''} | ||
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sanity_check_paths = { | ||
'files': [], | ||
'dirs': [name], | ||
} | ||
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moduleclass = 'bio' |