build.gradle

apply plugin: 'idea'

allprojects {
	apply plugin: 'java'
	sourceCompatibility = 1.8
	version = '0.2'
}

subprojects {
	repositories {
		mavenCentral()
	}
	dependencies {
		compile group: 'com.google.guava', name: 'guava', version: '19.0'
		compile group: 'org.slf4j', name: 'slf4j-api', version: '1.7.18'
		compile group: 'com.google.code.findbugs', name: 'jsr305', version: '3.0.0'
    testCompile group: 'junit', name: 'junit', version: '4.12'
    testCompile group: 'org.assertj', name: 'assertj-core', version: '3.1.0'
    testCompile group: 'org.assertj', name: 'assertj-guava', version: '1.3.1'
    testCompile group: 'org.mockito', name: 'mockito-core', version: '2.0.26-beta'
    testRuntime group: 'org.slf4j', name: 'slf4j-simple', version: '1.7.18'
	}
}

def mainProjects = [':core',':bed',':chain', ':fasta', ':gff', ':pedigree']
task jarAll( type: Jar , dependsOn: mainProjects.collect{ it+":compileJava"}) {
	baseName = rootProject.name + '-all'
	from files(mainProjects.collect{ project(it).sourceSets.main.output })
}

configure(jarAll) {
	group = 'build'
	description = 'Build a JAR file containing all subprojects'
}