trigger #21

	name: Liat Workflow

	on:
	push:
	branches:
	- liats/wip/ci_cd

	permissions:
	id-token: write
	contents: read

	jobs:
	create-conda-env:
	runs-on: ubuntu-latest
	container:
	image: amazonlinux:2
	steps:
	- name: Show OS version
	run: cat /etc/os-release
	- name: Check user
	run: \|
	whoami
	echo "HOME: $HOME"
	echo "GITHUB_WORKSPACE: $GITHUB_WORKSPACE"
	echo "PATH: $PATH"
	export PATH=$GITHUB_WORKSPACE:$PATH
	echo "PATH: $PATH"

	- name: Checkout Code
	continue-on-error: true
	uses: actions/checkout@v2 # Checks out the repository under $GITHUB_WORKSPACE.

	- name: Show workspace
	run: echo $GITHUB_WORKSPACE

	- name: Install conda
	run: \|
	curl -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
	bash Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda
	echo "export PATH=$HOME/miniconda/bin:$PATH" >> $HOME/.bashrc
	source $HOME/.bashrc
	conda init bash
	# conda config --set always_yes yes --set changeps1 no
	conda update -q conda
	conda info -a
	shell: bash -l {0}

	- name: Create conda environment
	run : \|
	conda create -n test-env python=3.10
	conda activate test-env
	conda install pheno-utils
	conda list
	shell: bash -l {0}

	- name: Configure AWS Credentials
	uses: aws-actions/configure-aws-credentials@v4
	with:
	role-to-assume: arn:aws:iam::081569964966:role/github_cicd
	aws-region: eu-west-1

	- name: Create and Upload Artifact to S3
	run: \|
	# Example of creating a tar.gz archive and uploading it
	echo "Uploading artifact to S3"
	# tar -czvf artifact.tar.gz /path/to/your/files
	# aws s3 cp artifact.tar.gz s3://YOUR_S3_BUCKET_NAME/path/to/upload/

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