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LiatSchulz committed Feb 13, 2024
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20 changes: 20 additions & 0 deletions .github/workflows/liat.yml
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Expand Up @@ -28,6 +28,26 @@ jobs:
- name: Checkout Code
uses: actions/checkout@v2 # Checks out the repository under $GITHUB_WORKSPACE.

- name: Show workspace
run: echo $GITHUB_WORKSPACE

- name: Install conda
run: |
curl -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda
echo "export PATH=$HOME/miniconda/bin:$PATH" >> $HOME/.bashrc
source $HOME/.bashrc
conda init bash
conda config --set always_yes yes --set changeps1 no
conda update -q conda
conda info -a
- name: Create conda environment
run : |
conda create -n test-env python=3.10
conda activate test-env
conda install pheno-utils
- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v4
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