Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

clarify weight of vine traits #76

Open
wants to merge 2 commits into
base: master
Choose a base branch
from
Open

clarify weight of vine traits #76

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
9cf5803
Clarify weight of vines terms
bellerbrock Oct 22, 2018
6115c9c
Clarify root weight terms
bellerbrock Oct 22, 2018
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
136 changes: 59 additions & 77 deletions sweetpotato_trait.obo
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@ date: 12:02:2018 19:35
saved-by: vagrant
auto-generated-by: OBO-Edit 2.3.1
default-namespace: SweetpotatoDefault
ontology: TEMP

[Term]
id: CO_331:0000000
Expand Down Expand Up @@ -2128,7 +2129,7 @@ synonym: "CRW" EXACT []
synonym: "RtCmW_Ms_kgplot" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000218 ! weight of commercial storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand All @@ -2149,7 +2150,7 @@ synonym: "NCRW" EXACT []
synonym: "RtNCmW_Ms_kgplot" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000221 ! weight of non-commercial storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand All @@ -2163,15 +2164,15 @@ created_by: W. Grueneberg

[Term]
id: CO_331:0000227
name: Weight of vines measuring kg per plot
name: Weight of fresh vines measuring kg per plot
namespace: SweetpotatoTrait
def: "Weight of vines" []
synonym: "VnW_Ms_kgplot" EXACT []
synonym: "VnWt_F_kgplot" EXACT []
synonym: "VW" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000224 ! weight of vines
relationship: variable_of CO_331:0000893 ! kg/plot
relationship: variable_of CO_331:0000894 ! measurements of vine mass
relationship: variable_of CO_331:0000894 ! measurement of fresh vine weight

[Term]
id: CO_331:0000230
Expand Down Expand Up @@ -2230,89 +2231,71 @@ relationship: variable_of CO_331:0000097 ! storage root cracking
relationship: variable_of CO_331:0000902 ! estimation of cracking roots
relationship: variable_of CO_331:0000903 ! rtscr 4 pt. scale

[Term]
id: CO_331:0000240
name: Fresh weight of storage root
namespace: SweetpotatoTrait
def: "Fresh weight of storage root samples" []
synonym: "RtFWt" EXACT []
is_a: CO_331:1000007 ! Quality_trait
created_by: W. Grueneberg

[Term]
id: CO_331:0000243
name: Fresh weight of storage root samples measuring g of sample
name: weight of storage root sample measuring g of fresh sample
namespace: SweetpotatoTrait
def: "Fresh weight of storage root samples" []
def: "Fresh weight of storage root sample" []
synonym: "DMF" EXACT []
synonym: "RtFWt_Ms_g" EXACT []
synonym: "RtSmpWt_F_g" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000240 ! Fresh weight of storage root
relationship: variable_of CO_331:0000904 ! measurements of fresh root mass
relationship: variable_of CO_331:0000244 ! Weight of storage root sample
relationship: variable_of CO_331:0000904 ! measurement of storage root sample fresh weight
relationship: variable_of CO_331:0000905 ! g

[Term]
id: CO_331:0000244
name: Dry weight of storage root
name: Weight of storage root sample
namespace: SweetpotatoTrait
def: "Dry weight of storage root samples" []
synonym: "RtDWt" EXACT []
def: "Weight of storage root sample" []
synonym: "RtSmpWt" EXACT []
is_a: CO_331:1000007 ! Quality_trait
created_by: W. Grueneberg

[Term]
id: CO_331:0000247
name: Dry weight of storage root samples measuring g of sample
name: weight of storage root sample measuring g of dry sample
namespace: SweetpotatoTrait
def: "Dry weight of storage root samples" []
def: "Dry weight of storage root sample" []
synonym: "DMD" EXACT []
synonym: "RtDWt_Ms_g" EXACT []
synonym: "RtSmpWt_D_g" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000244 ! Dry weight of storage root
relationship: variable_of CO_331:0000244 ! Weight of storage root sample
relationship: variable_of CO_331:0000905 ! g
relationship: variable_of CO_331:0000906 ! measurements of dry root mass

[Term]
id: CO_331:0000248
name: Fresh weight of vines
namespace: SweetpotatoTrait
def: "Weight of vines samples" []
synonym: "VnFWt" EXACT []
is_a: CO_331:1000007 ! Quality_trait
created_by: W. Grueneberg
relationship: variable_of CO_331:0000906 ! measurement of storage root sample dry weight

[Term]
id: CO_331:0000251
name: Fresh weight of vines measuring g of sample
name: weight of vine sample measuring g of fresh sample
namespace: SweetpotatoTrait
def: "Weight of vines samples" []
def: "Fresh weight of vine sample in grams" []
synonym: "DMFV" EXACT []
synonym: "VnFWt_Et_g" EXACT []
synonym: "VnSmpWt_F_g" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000248 ! Fresh weight of vines
relationship: variable_of CO_331:0000252 ! weight of vine sample
relationship: variable_of CO_331:0000905 ! g
relationship: variable_of CO_331:0000907 ! measurements of fresh vine mass
relationship: variable_of CO_331:0000907 ! measurement of vine sample fresh weight

[Term]
id: CO_331:0000252
name: Dry weight of vines
name: weight of vine sample
namespace: SweetpotatoTrait
def: "Weight of vines samples" []
synonym: "VnDWt" EXACT []
def: "Weight of vine sample" []
synonym: "VnSmpWt" EXACT []
is_a: CO_331:1000007 ! Quality_trait
created_by: W. Grueneberg

[Term]
id: CO_331:0000255
name: Dry weight of vines measuring g of sample
name: weight of vine sample measuring g of dry sample
namespace: SweetpotatoTrait
def: "Weight of vines samples" []
def: "Dry weight of vine sample measured in grams" []
synonym: "DMDV" EXACT []
synonym: "VnDWt_Ms_g" EXACT []
synonym: "VnSmpWt_D_g" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000252 ! Dry weight of vines
relationship: variable_of CO_331:0000252 ! weight of vine sample
relationship: variable_of CO_331:0000905 ! g
relationship: variable_of CO_331:0000908 ! measurements of dry vine mass
relationship: variable_of CO_331:0000908 ! measurement of vine sample dry weight

[Term]
id: CO_331:0000256
Expand Down Expand Up @@ -3867,7 +3850,7 @@ synonym: "RtUS1W_Ms_kgplot" EXACT []
synonym: "US1" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000601 ! weight of total US no. 1 storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand All @@ -3879,7 +3862,7 @@ synonym: "CAN" EXACT []
synonym: "RtCanW_Ms_kgplot" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000602 ! weight of canner storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand All @@ -3891,7 +3874,7 @@ synonym: "JUM" EXACT []
synonym: "RtJumW_Ms_kgplot" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000603 ! weight of jumbo storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand All @@ -3903,7 +3886,7 @@ synonym: "CUL" EXACT []
synonym: "RtCulW_Ms_kgplot" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000604 ! weight of cull storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand All @@ -3915,7 +3898,7 @@ synonym: "90CT" EXACT []
synonym: "Rt90ctW_Ms_kgplot" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000605 ! weight of 90 count US no. 1 storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand All @@ -3927,7 +3910,7 @@ synonym: "55CT" EXACT []
synonym: "Rt55ctW_Ms_kgplot" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000606 ! weight of 55 count US no. 1 storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand All @@ -3939,7 +3922,7 @@ synonym: "40CT" EXACT []
synonym: "Rt40ctW_Ms_kgplot" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000607 ! weight of 40 count US no. 1 storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand All @@ -3951,7 +3934,7 @@ synonym: "32CT" EXACT []
synonym: "Rt32ctW_Ms_kgplot" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0000608 ! weight of 32 count US no. 1 storage roots
relationship: variable_of CO_331:0000892 ! measurements of root mass
relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: variable_of CO_331:0000893 ! kg/plot

[Term]
Expand Down Expand Up @@ -6142,7 +6125,7 @@ relationship: scale_of CO_331:0000890 ! estimated number per plant - method

[Term]
id: CO_331:0000892
name: measurements of root mass
name: measurement of fresh storage root weight
namespace: SweetpotatoMethod
def: "Measured using scales" []
is_a: CO_331:1000011 ! Measurement
Expand All @@ -6154,15 +6137,15 @@ id: CO_331:0000893
name: kg/plot
namespace: SweetpotatoScale
is_a: CO_331:1000019 ! Numerical
relationship: scale_of CO_331:0000892 ! measurements of root mass
relationship: scale_of CO_331:0000894 ! measurements of vine mass
relationship: scale_of CO_331:0000892 ! measurement of fresh storage root weight
relationship: scale_of CO_331:0000894 ! measurement of fresh vine weight
relationship: scale_of CO_331:0000895 ! estimated weight per plot - method

[Term]
id: CO_331:0000894
name: measurements of vine mass
name: measurement of fresh vine weight
namespace: SweetpotatoMethod
def: "Measured using scales" []
def: "Fresh vine weight measured using a scale" []
is_a: CO_331:1000011 ! Measurement
relationship: method_of CO_331:0000224 ! weight of vines

Expand Down Expand Up @@ -6252,45 +6235,43 @@ relationship: scale_of CO_331:0000902 ! estimation of cracking roots

[Term]
id: CO_331:0000904
name: measurements of fresh root mass
name: measurement of storage root sample fresh weight
namespace: SweetpotatoMethod
def: "Fresh weight of storage root samples (roughly 200g recommended sample size)" []
def: "Fresh weight of storage root sample (roughly 200g recommended sample size)" []
is_a: CO_331:1000011 ! Measurement
relationship: method_of CO_331:0000240 ! Fresh weight of storage root

[Term]
id: CO_331:0000905
name: g
namespace: SweetpotatoScale
is_a: CO_331:1000019 ! Numerical
relationship: scale_of CO_331:0000904 ! measurements of fresh root mass
relationship: scale_of CO_331:0000906 ! measurements of dry root mass
relationship: scale_of CO_331:0000907 ! measurements of fresh vine mass
relationship: scale_of CO_331:0000908 ! measurements of dry vine mass
relationship: scale_of CO_331:0000904 ! measurement of storage root sample fresh weight
relationship: scale_of CO_331:0000906 ! measurement of storage root sample dry weight
relationship: scale_of CO_331:0000907 ! measurement of vine sample fresh weight
relationship: scale_of CO_331:0000908 ! measurement of vine sample dry weight

[Term]
id: CO_331:0000906
name: measurements of dry root mass
name: measurement of storage root sample dry weight
namespace: SweetpotatoMethod
def: "Dry weight of storage root samples" []
def: "Dry weight of storage root sample" []
is_a: CO_331:1000011 ! Measurement
relationship: method_of CO_331:0000244 ! Dry weight of storage root
relationship: method_of CO_331:0000244 ! Weight of storage root sample

[Term]
id: CO_331:0000907
name: measurements of fresh vine mass
name: measurement of vine sample fresh weight
namespace: SweetpotatoMethod
def: "Fresh weight of vines" []
def: "Fresh weight of vine sample" []
is_a: CO_331:1000011 ! Measurement
relationship: method_of CO_331:0000248 ! Fresh weight of vines

[Term]
id: CO_331:0000908
name: measurements of dry vine mass
name: measurement of vine sample dry weight
namespace: SweetpotatoMethod
def: "Dry weight of vines" []
is_a: CO_331:1000011 ! Measurement
relationship: method_of CO_331:0000252 ! Dry weight of vines
relationship: method_of CO_331:0000252 ! weight of vine sample

[Term]
id: CO_331:0000909
Expand Down Expand Up @@ -7314,3 +7295,4 @@ name: scale_of
[Typedef]
id: variable_of
name: variable_of