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Laurel Cooper edited this page Feb 8, 2024
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Welcome to the plant-stress-ontology wiki
Notes on generating the OWL and OBO files:
- Run pattern apply ---> direct into 'ontology-of-plant-stress.owl'
- change Makefile to use 'ontology-of-plant-stress.owl' as the input.
- output of >make should be: oops.owl, oops.obo
cat ontology-of-plant-stress.owl | grep Class:\ NCBITaxon #this returns all the NCBI taxon IDs that are in the .owl file
#copy paste these into the NCBITaxon_imports.txt and add the root http://purl.obolibrary.org/obo/