How to run the imports, patterns and releases:

• Clone the Plant Stress Ontology repository, (if not already done) and pull any updates

• Start Docker Desktop app

• Navigate in terminal to the **PSO folder: e.g. /Users/cooperl/GitHub/plant-stress-ontology/src/ontology

• Run the following commands (depending on what’s needed):

• Updating the Imports: sh run.sh make refresh-XXX, where XXX is the prefix of the ontology you want to refresh the imports

• • For NCBI: sh run.sh make refresh-ncbitaxon
• • For all: sh run.sh make all_imports

• Updating the Patterns: sh run.sh make ../patterns/definitions.owl -B IMP=false

• Doing a Release: sh run.sh make prepare_release -B