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210 followers · 15 following

Achievements

Achievement: Pull Sharkx2Achievement: Galaxy Brainx2Achievement: Arctic Code Vault ContributorAchievement: Starstruckx2

Achievements

Achievement: Pull Sharkx2Achievement: Galaxy Brainx2Achievement: Arctic Code Vault ContributorAchievement: Starstruckx2

Organizations

@CompEpigen

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  1. maftools Public

    Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

    R 460 222

  2. trackplot Public

    Generate IGV style locus tracks from bigWig files in R

    R 158 19

  3. TCGAmutations Public

    R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE

    R 93 25

  4. basegraphics Public

    Pretty plots using pure base graphics in R

    R 83 11

  5. somaticfreq Public

    knowledge-based genotyping of cancer hotspots from the tumor BAM files

    C 21 4

  6. basecounts Public

    A tool to extract ATGC/Indel read counts at user specific loci from BAM files

    C 5 1

91 contributions in the last year

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Activity overview

Contributed to PoisonAlien/maftools, PoisonAlien/PoisonAlien.github.io, PoisonAlien/basegraphics and 4 other repositories
Loading A graph representing PoisonAlien's contributions from April 21, 2024 to April 22, 2025. The contributions are 69% commits, 23% pull requests, 5% code review, 3% issues.

Contribution activity

April 2025

Created an issue in CompEpigen/methrix that received 1 comment

methrix for ONT support

Hi @tkik We should think of supporting ONT methylation files. An additional argument to pipeline to import modkit output would be an easier solution.…

1 comment
16 contributions in private repositories Apr 1 – Apr 21
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