Canceling since a higher priority waiting request for 'Run Workflows-cwltool-refs/heads/master-vjaganat90/sophios-main' exists

Runner ncats-polus-lnx-dev07 did not respond to a cancelation request with 00:05:00.

warning libmamba [ca-certificates-2024.8.30-hbcca054_0] The following files were already present in the environment: - ssl/cacert.pem - ssl/cert.pem

warning libmamba [ld_impl_linux-64-2.40-hf3520f5_7] The following files were already present in the environment: - bin/x86_64-conda-linux-gnu-ld - bin/x86_64-conda_cos6-linux-gnu-ld - x86_64-conda-linux-gnu/bin/ld - x86_64-conda_cos6-linux-gnu/bin/ld

warning libmamba [tzdata-2024a-h8827d51_1] The following files were already present in the environment: - share/zoneinfo/Africa/Abidjan - share/zoneinfo/Africa/Accra - share/zoneinfo/Africa/Addis_Ababa - share/zoneinfo/Africa/Algiers - share/zoneinfo/Africa/Asmara - share/zoneinfo/Africa/Asmera - share/zoneinfo/Africa/Bamako - share/zoneinfo/Africa/Bangui - share/zoneinfo/Africa/Banjul - share/zoneinfo/Africa/Bissau - share/zoneinfo/Africa/Blantyre - share/zoneinfo/Africa/Brazzaville - share/zoneinfo/Africa/Bujumbura - share/zoneinfo/Africa/Cairo - share/zoneinfo/Africa/Casablanca - share/zoneinfo/Africa/Ceuta - share/zoneinfo/Africa/Conakry - share/zoneinfo/Africa/Dakar - share/zoneinfo/Africa/Dar_es_Salaam - share/zoneinfo/Africa/Djibouti - share/zoneinfo/Africa/Douala - share/zoneinfo/Africa/El_Aaiun - share/zoneinfo/Africa/Freetown - share/zoneinfo/Africa/Gaborone - share/zoneinfo/Africa/Harare - share/zoneinfo/Africa/Johannesburg - share/zoneinfo/Africa/Juba - share/zoneinfo/Africa/Kampala - share/zoneinfo/Africa/Khartoum - share/zoneinfo/Africa/Kigali - share/zoneinfo/Africa/Kinshasa - share/zoneinfo/Africa/Lagos - share/zoneinfo/Africa/Libreville - share/zoneinfo/Africa/Lome - share/zoneinfo/Africa/Luanda - share/zoneinfo/Africa/Lubumbashi - share/zoneinfo/Africa/Lusaka - share/zoneinfo/Africa/Malabo - share/zoneinfo/Africa/Maputo - share/zoneinfo/Africa/Maseru - share/zoneinfo/Africa/Mbabane - share/zoneinfo/Africa/Mogadishu - share/zoneinfo/Africa/Monrovia - share/zoneinfo/Africa/Nairobi - share/zoneinfo/Africa/Ndjamena - share/zoneinfo/Africa/Niamey - share/zoneinfo/Africa/Nouakchott - share/zoneinfo/Africa/Ouagadougou - share/zoneinfo/Africa/Porto-Novo - share/zoneinfo/Africa/Sao_Tome - share/zoneinfo/Africa/Timbuktu - share/zoneinfo/Africa/Tripoli - share/zoneinfo/Africa/Tunis - share/zoneinfo/Africa/Windhoek - share/zoneinfo/America/Adak - share/zoneinfo/America/Anchorage - share/zoneinfo/America/Anguilla - share/zoneinfo/America/Antigua - share/zoneinfo/America/Araguaina - share/zoneinfo/America/Argentina/Buenos_Aires - share/zoneinfo/America/Argentina/Catamarca - share/zoneinfo/America/Argentina/ComodRivadavia - share/zoneinfo/America/Argentina/Cordoba - share/zoneinfo/America/Argentina/Jujuy - share/zoneinfo/America/Argentina/La_Rioja - share/zoneinfo/America/Argentina/Mendoza - share/zoneinfo/America/Argentina/Rio_Gallegos - share/zoneinfo/America/Argentina/Salta - share/zoneinfo/America/Argentina/San_Juan - share/zoneinfo/America/Argentina/San_Luis - share/zoneinfo/America/Argentina/Tucuman - share/zoneinfo/America/Argentina/Ushuaia - share/zoneinfo/America/Aruba - share/zoneinfo/America/Asuncion - share/zoneinfo/America/Atikokan - share/zoneinfo/America/Atka - share/zoneinfo/America/Bahia - share/zoneinfo/America/Bahia_Banderas - share/zoneinfo/America/Barbados - share/zoneinfo/America/Belem - share/zoneinfo/America/Belize - share/zoneinfo/America/Blanc-Sablon - share/zoneinfo/America/Boa_Vista - share/zoneinfo/America/Bogota - share/zoneinfo/America/Boise - share/zoneinfo/America/Buenos_Aires - share/zoneinfo/America/Cambridge_Bay - share/zoneinfo/America/Campo_Grande - share/zoneinfo/America/Cancun - share/zoneinfo/America/Caracas - share/zoneinfo/America/Catamarca - share/zoneinfo/America/Cayenne - share/zoneinfo/America/Cayman - share/zoneinfo/America/Chicago - share/zoneinfo/America/Chihuahua - share/zoneinfo/America/Ciudad_Juarez - share/zoneinfo/America/Coral_Harbour - share/zoneinfo/America/Cordoba - share/zoneinfo/America/Costa_Rica - share/zoneinfo/America/Creston - share/zoneinfo/America/Cuiaba - share/zoneinfo/America/Curacao - share/zoneinfo/America/Danmarkshavn - share/zoneinfo/A

warning libmamba [libgomp-14.1.0-h77fa898_1] The following files were already present in the environment: - lib/libgomp.so - lib/libgomp.so.1.0.0 - share/licenses/gcc-libs/RUNTIME.LIBRARY.EXCEPTION.gomp_copy

warning libmamba [_openmp_mutex-4.5-2_gnu] The following files were already present in the environment: - lib/libgomp.so.1

warning libmamba [libgcc-14.1.0-h77fa898_1] The following files were already present in the environment: - lib/libatomic.so - lib/libatomic.so.1 - lib/libatomic.so.1.2.0 - lib/libgcc_s.so - lib/libgcc_s.so.1 - lib/libitm.so - lib/libitm.so.1 - lib/libitm.so.1.0.0 - lib/libquadmath.so - lib/libquadmath.so.0 - lib/libquadmath.so.0.0.0 - share/info/libgomp.info - share/info/libquadmath.info - share/licenses/gcc-libs/RUNTIME.LIBRARY.EXCEPTION

warning libmamba [libexpat-2.6.3-h5888daf_0] The following files were already present in the environment: - lib/libexpat.so.1 - lib/libexpat.so.1.9.3

warning libmamba [libstdcxx-14.1.0-hc0a3c3a_1] The following files were already present in the environment: - lib/libstdc++.so - lib/libstdc++.so.6 - lib/libstdc++.so.6.0.33 - share/licenses/libstdc++/RUNTIME.LIBRARY.EXCEPTION

warning libmamba [openssl-3.3.2-hb9d3cd8_0] The following files were already present in the environment: - bin/c_rehash - bin/openssl - include/openssl/aes.h - include/openssl/asn1.h - include/openssl/asn1_mac.h - include/openssl/asn1err.h - include/openssl/asn1t.h - include/openssl/async.h - include/openssl/asyncerr.h - include/openssl/bio.h - include/openssl/bioerr.h - include/openssl/blowfish.h - include/openssl/bn.h - include/openssl/bnerr.h - include/openssl/buffer.h - include/openssl/buffererr.h - include/openssl/camellia.h - include/openssl/cast.h - include/openssl/cmac.h - include/openssl/cmp.h - include/openssl/cmp_util.h - include/openssl/cmperr.h - include/openssl/cms.h - include/openssl/cmserr.h - include/openssl/comp.h - include/openssl/comperr.h - include/openssl/conf.h - include/openssl/conf_api.h - include/openssl/conferr.h - include/openssl/configuration.h - include/openssl/conftypes.h - include/openssl/core.h - include/openssl/core_dispatch.h - include/openssl/core_names.h - include/openssl/core_object.h - include/openssl/crmf.h - include/openssl/crmferr.h - include/openssl/crypto.h - include/openssl/cryptoerr.h - include/openssl/cryptoerr_legacy.h - include/openssl/ct.h - include/openssl/cterr.h - include/openssl/decoder.h - include/openssl/decodererr.h - include/openssl/des.h - include/openssl/dh.h - include/openssl/dherr.h - include/openssl/dsa.h - include/openssl/dsaerr.h - include/openssl/dtls1.h - include/openssl/e_os2.h - include/openssl/e_ostime.h - include/openssl/ebcdic.h - include/openssl/ec.h - include/openssl/ecdh.h - include/openssl/ecdsa.h - include/openssl/ecerr.h - include/openssl/encoder.h - include/openssl/encodererr.h - include/openssl/engine.h - include/openssl/engineerr.h - include/openssl/err.h - include/openssl/ess.h - include/openssl/esserr.h - include/openssl/evp.h - include/openssl/evperr.h - include/openssl/fips_names.h - include/openssl/fipskey.h - include/openssl/hmac.h - include/openssl/hpke.h - include/openssl/http.h - include/openssl/httperr.h - include/openssl/idea.h - include/openssl/kdf.h - include/openssl/kdferr.h - include/openssl/lhash.h - include/openssl/macros.h - include/openssl/md2.h - include/openssl/md4.h - include/openssl/md5.h - include/openssl/mdc2.h - include/openssl/modes.h - include/openssl/obj_mac.h - include/openssl/objects.h - include/openssl/objectserr.h - include/openssl/ocsp.h - include/openssl/ocsperr.h - include/openssl/opensslconf.h - include/openssl/opensslv.h - include/openssl/ossl_typ.h - include/openssl/param_build.h - include/openssl/params.h - include/openssl/pem.h - include/openssl/pem2.h - include/openssl/pemerr.h - include/openssl/pkcs12.h - include/openssl/pkcs12err.h - include/openssl/pkcs7.h - include/openssl/pkcs7err.h - include/openssl/prov_ssl.h - include/openssl/proverr.h - include/openssl/provider.h - include/openssl/quic.h - include/openssl/rand.h - include/openssl/randerr.h - include/openssl/rc2.h - include/openssl/rc4.h - include/openssl/rc5.h - include/openssl/ripemd.h - include/openssl/rsa.h - include/openssl/rsaerr.h - include/openssl/safestack.h - include/openssl/seed.h - include/openssl/self_test.h - include/openssl/sha.h - include/openssl/srp.h - include/openssl/srtp.h - include/openssl/ssl.h - include/openssl/ssl2.h - include/openssl/ssl3.h - include/openssl/sslerr.h - include/openssl/sslerr_legacy.h - include/openssl/stack.h - include/openssl/store.h - include/openssl/storeerr.h - include/openssl/symhacks.h - include/openssl/thread.h - include/openssl/tls1.h - include/openssl/trace.h - include/openssl/ts.h