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Merge pull request #8 from plant-ai-biophysics-lab/dev
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Release v0.2.2
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@amogh7joshi
amogh7joshi authored Dec 1, 2021
2 parents da54798 + 43ac469 commit cb5dfbd
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Showing 19 changed files with 460 additions and 66 deletions.
4 changes: 2 additions & 2 deletions agml/__init__.py
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Expand Up @@ -12,7 +12,7 @@
# See the License for the specific language governing permissions and
# limitations under the License.

__version__ = '0.2.1'
__version__ = '0.2.2'
__all__ = ['data', 'backend', 'viz']

# If AgML is being imported for the first time, then we need to setup
Expand All @@ -24,7 +24,7 @@ def _setup():
_os.makedirs(_os.path.expanduser('~/.agml'))
with open(_os.path.join(
_os.path.expanduser('~/.agml/config.json')), 'w') as f:
_json.dump({'dataset_path': _os.path.expanduser('~/.agml/datasets')}, f)
_json.dump({'data_path': _os.path.expanduser('~/.agml/datasets')}, f)
_setup(); del _setup # noqa

# There are no top-level imported functions or classes, only the modules.
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255 changes: 235 additions & 20 deletions agml/_assets/public_datasources.json
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Expand Up @@ -17,7 +17,19 @@
"input_data_format": "jpg",
"annotation_format": "directory_names",
"n_images": "1295",
"docs_url": "https://github.com/AI-Lab-Makerere/ibean/"
"docs_url": "https://github.com/AI-Lab-Makerere/ibean/",
"stats": {
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],
"std": [
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]
}
},
"carrot_weeds_germany": {
"crop_types": {
Expand All @@ -36,7 +48,19 @@
"input_data_format": "png",
"annotation_format": "image",
"n_images": "60",
"docs_url": "https://github.com/cwfid/dataset"
"docs_url": "https://github.com/cwfid/dataset",
"stats": {
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}
},
"plant_seedlings_aarhus": {
"crop_types": {
Expand Down Expand Up @@ -65,7 +89,19 @@
"input_data_format": "png",
"annotation_format": "directory_names",
"n_images": "5588",
"docs_url": "https://vision.eng.au.dk/plant-seedlings-dataset/"
"docs_url": "https://vision.eng.au.dk/plant-seedlings-dataset/",
"stats": {
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},
"soybean_weed_uav_brazil": {
"crop_types": {
Expand All @@ -86,7 +122,19 @@
"input_data_format": "tif",
"annotation_format": "directory_names",
"n_images": "15336",
"docs_url": "https://data.mendeley.com/datasets/3fmjm7ncc6/2"
"docs_url": "https://data.mendeley.com/datasets/3fmjm7ncc6/2",
"stats": {
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},
"sugarcane_damage_usa": {
"crop_types": {
Expand All @@ -108,7 +156,19 @@
"input_data_format": "bmp",
"annotation_format": "directory_names",
"n_images": "153",
"docs_url": "https://github.com/The77Lab/SugarcaneBilletsDataset"
"docs_url": "https://github.com/The77Lab/SugarcaneBilletsDataset",
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},
"crop_weeds_greece": {
"crop_types": {
Expand All @@ -128,7 +188,19 @@
"input_data_format": "jpg",
"annotation_format": "directory_names",
"n_images": "508",
"docs_url": "https://github.com/AUAgroup/early-crop-weed"
"docs_url": "https://github.com/AUAgroup/early-crop-weed",
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},
"sugarbeet_weed_segmentation": {
"crop_types": {
Expand All @@ -147,7 +219,19 @@
"input_data_format": "png",
"annotation_format": "image",
"n_images": "1931",
"docs_url": "https://github.com/inkyusa/weedNet"
"docs_url": "https://github.com/inkyusa/weedNet",
"stats": {
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},
"rangeland_weeds_australia": {
"crop_types": {
Expand All @@ -174,7 +258,19 @@
"input_data_format": "jpg",
"annotation_format": "directory_names",
"n_images": "17509",
"docs_url": "https://github.com/AlexOlsen/DeepWeeds"
"docs_url": "https://github.com/AlexOlsen/DeepWeeds",
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}
},
"fruit_detection_worldwide": {
"crop_types": {
Expand All @@ -198,7 +294,19 @@
"input_data_format": "jpg",
"annotation_format": "coco_json",
"n_images": "565",
"docs_url": "https://drive.google.com/drive/folders/1CmsZb1caggLRN7ANfika8WuPiywo4mBb"
"docs_url": "https://drive.google.com/drive/folders/1CmsZb1caggLRN7ANfika8WuPiywo4mBb",
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},
"leaf_counting_denmark": {
"crop_types": {
Expand All @@ -218,7 +326,19 @@
"input_data_format": "png",
"annotation_format": "directory_names",
"n_images": "9372",
"docs_url": "https://vision.eng.au.dk/leaf-counting-dataset/"
"docs_url": "https://vision.eng.au.dk/leaf-counting-dataset/",
"stats": {
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},
"apple_detection_usa": {
"crop_types": {
Expand All @@ -236,7 +356,19 @@
"input_data_format": "png",
"annotation_format": "coco_json",
"n_images": "2290",
"docs_url": "https://hdl.handle.net/2376/17721"
"docs_url": "https://hdl.handle.net/2376/17721",
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}
},
"cotton_seedling_counting": {
"crop_types": {
Expand All @@ -255,7 +387,19 @@
"input_data_format": "png",
"annotation_format": "coco_json",
"n_images": "2290",
"docs_url": "https://github.com/UGA-BSAIL/deepseedling"
"docs_url": "https://github.com/UGA-BSAIL/deepseedling",
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},
"mango_detection_australia": {
"crop_types": {
Expand All @@ -273,7 +417,19 @@
"input_data_format": "jpg",
"annotation_format": "coco_json",
"n_images": "1730",
"docs_url": "https://researchdata.edu.au/mangoyolo-set/1697505"
"docs_url": "https://researchdata.edu.au/mangoyolo-set/1697505",
"stats": {
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}
},
"apple_flower_segmentation": {
"crop_types": {
Expand All @@ -291,7 +447,19 @@
"input_data_format": "jpg",
"annotation_format": "image",
"n_images": "148",
"docs_url": "https://data.nal.usda.gov/dataset/data-multi-species-fruit-flower-detection-using-refined-semantic-segmentation-network"
"docs_url": "https://data.nal.usda.gov/dataset/data-multi-species-fruit-flower-detection-using-refined-semantic-segmentation-network",
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},
"apple_segmentation_minnesota": {
"crop_types": {
Expand All @@ -309,7 +477,19 @@
"input_data_format": "png",
"annotation_format": "image",
"n_images": "670",
"docs_url": "https://rsn.umn.edu/projects/orchard-monitoring/minneapple"
"docs_url": "https://rsn.umn.edu/projects/orchard-monitoring/minneapple",
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"rice_seedling_segmentation": {
"crop_types": {
Expand All @@ -329,7 +509,19 @@
"input_data_format": "jpg",
"annotation_format": "image",
"n_images": "224",
"docs_url": "https://github.com/kabbas570/CED-Net-Crops-and-Weeds-Segmentation-for-Smart-Farming-Using-a-Small-Cascaded-Encoder-Decoder-Archi"
"docs_url": "https://github.com/kabbas570/CED-Net-Crops-and-Weeds-Segmentation-for-Smart-Farming-Using-a-Small-Cascaded-Encoder-Decoder-Archi",
"stats": {
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},
"plant_village_classification": {
"crop_types": {
Expand Down Expand Up @@ -385,7 +577,19 @@
"input_data_format": "jpg",
"annotation_format": "directory_names",
"n_images": "55448",
"docs_url": "https://github.com/spMohanty/PlantVillage-Dataset"
"docs_url": "https://github.com/spMohanty/PlantVillage-Dataset",
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},
"plant_doc_classification": {
"crop_types": {
Expand Down Expand Up @@ -430,7 +634,18 @@
"input_data_format": "jpg",
"annotation_format": "directory_names",
"n_images": "2598",
"docs_url": "https://github.com/pratikkayal/PlantDoc-Dataset"
"docs_url": "https://github.com/pratikkayal/PlantDoc-Dataset",
"stats": {
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}
}
}

}
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