Port VF2 to rustworkx-core
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Pull Request Test Coverage Report for Build 9751462927Warning: This coverage report may be inaccurate.This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.
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Pull Request Test Coverage Report for Build 9755097325Warning: This coverage report may be inaccurate.This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.
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Pull Request Test Coverage Report for Build 9765697514Warning: This coverage report may be inaccurate.This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.
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IvanIsCoding
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Jul 17, 2024
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Georgios would be the best person to review this but I will have to step in. Overall the rustworkx-core looks like a clean port! 10/10, I think we might get more Rust users for rustworkx-core as Isomorphism is one of the methods that differentiate our library.
However, I do not want to use Python::assume_gil_acquired(). So far we have always let PyO3 handle all the uncertainities in the Python FFI, we have zero unsafe code in Rustworkx directly. Can't we use Python::with_gil or some type of closure? There has to be a better way
| n1: NodeIndex, | ||
| ) -> Result<bool, Self::Error> { | ||
| if let (Some(a), Some(b)) = (g0.node_weight(n0), g1.node_weight(n1)) { | ||
| unsafe { |
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Just because PyO3 lets us do this does not mean we should take it. I think it is a big amount of risk for a refactor
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I agree with Ivan here, this is not a good idea it's not just unsafe in the keyword but also I don't think the assertion around gil ownership is accurate. Are you sure this is true in the presence of python threads? I think this would be safe in the case of single threaded python code, but if we start accounting for multiple threads around vf2_mapping I don't believe it is.
I think we should be usingwith_gil or similar here, and then see what the runtime overhead is using it. If it's significant we can revisit other strategies for the python side of the library.
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Thanks for the review, @IvanIsCoding! Regarding the Python GIL acquisition in the The main issue with threading the actual GIL into those callbacks is that the callbacks get moved into the We certainly could use Given that the matchers are only invoked while we're pumping the iterator from Python, we should be safe to assume the GIL is acquired, as long as we aren't using Rayon (or other multithreading) to perform matching on other threads. |
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I think However, before we do that: can you try using a PyFunction similar to how we use it in here: Line 312 in 2734eee We pass PyFunction's to Dijkstra. Couldn't we do the same here? Then the calls would be |
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This commit migrates the entirety of the `DAGCircuit` class to Rust. It fully replaces the Python version of the class. The primary advantage of this migration is moving from a Python space rustworkx directed graph representation to a Rust space petgraph (the upstream library for rustworkx) directed graph. Moving the graph data structure to rust enables us to directly interact with the DAG directly from transpiler passes in Rust in the future. This will enable a significant speed-up in those transpiler passes. Additionally, this should also improve the memory footprint as the DAGCircuit no longer stores `DAGNode` instances, and instead stores a lighter enum NodeType, which simply contains a `PackedInstruction` or the wire objects directly. Internally, the new Rust-based `DAGCircuit` uses a `petgraph::StableGraph` with node weights of type `NodeType` and edge weights of type `Wire`. The NodeType enum contains variants for `QubitIn`, `QubitOut`, `ClbitIn`, `ClbitOut`, and `Operation`, which should save us from all of the `isinstance` checking previously needed when working with `DAGNode` Python instances. The `Wire` enum contains variants `Qubit`, `Clbit`, and `Var`. As the full Qiskit data model is not rust-native at this point while all the class code in the `DAGCircuit` exists in Rust now, there are still sections that rely on Python or actively run Python code via Rust to function. These typically involve anything that uses `condition`, control flow, classical vars, calibrations, bit/register manipulation, etc. In the future as we either migrate this functionality to Rust or deprecate and remove it this can be updated in place to avoid the use of Python. API access from Python-space remains in terms of `DAGNode` instances to maintain API compatibility with the Python implementation. However, internally, we convert to and deal in terms of NodeType. When the user requests a particular node via lookup or iteration, we inflate an ephemeral `DAGNode` based on the internal `NodeType` and give them that. This is very similar to what was done in Qiskit#10827 when porting CircuitData to Rust. As part of this porting there are a few small differences to keep in mind with the new Rust implementation of DAGCircuit. The first is that the topological ordering is slightly different with the new DAGCircuit. Previously, the Python version of `DAGCircuit` using a lexicographical topological sort key which was basically `"0,1,0,2"` where the first `0,1` are qargs on qubit indices `0,1` for nodes and `0,2` are cargs on clbit indices `0,2`. However, the sort key has now changed to be `(&[Qubit(0), Qubit(1)], &[Clbit(0), Clbit(2)])` in rust in this case which for the most part should behave identically, but there are some edge cases that will appear where the sort order is different. It will always be a valid topological ordering as the lexicographical key is used as a tie breaker when generating a topological sort. But if you're relaying on the exact same sort order there will be differences after this PR. The second is that a lot of undocumented functionality in the DAGCircuit which previously worked because of Python's implicit support for interacting with data structures is no longer functional. For example, previously the `DAGCircuit.qubits` list could be set directly (as the circuit visualizers previously did), but this was never documented as supported (and would corrupt the DAGCircuit). Any functionality like this we'd have to explicit include in the Rust implementation and as they were not included in the documented public API this PR opted to remove the vast majority of this type of functionality. The last related thing might require future work to mitigate is that this PR breaks the linkage between `DAGNode` and the underlying `DAGCirucit` object. In the Python implementation the `DAGNode` objects were stored directly in the `DAGCircuit` and when an API method returned a `DAGNode` from the DAG it was a shared reference to the underlying object in the `DAGCircuit`. This meant if you mutated the `DAGNode` it would be reflected in the `DAGCircuit`. This was not always a sound usage of the API as the `DAGCircuit` was implicitly caching many attributes of the DAG and you should always be using the `DAGCircuit` API to mutate any nodes to prevent any corruption of the `DAGCircuit`. However, now as the underlying data store for nodes in the DAG are no longer the python space objects returned by `DAGCircuit` methods mutating a `DAGNode` will not make any change in the underlying `DAGCircuit`. This can come as quite the surprise at first, especially if you were relying on this side effect, even if it was unsound. It's also worth noting that 2 large pieces of functionality from rustworkx are included in this PR. These are the new files `rustworkx_core_vnext` and `dot_utils` which are rustworkx's VF2 implementation and its dot file generation. As there was not a rust interface exposed for this functionality from rustworkx-core there was no way to use these functions in rustworkx. Until these interfaces added to rustworkx-core in future releases we'll have to keep these local copies. The vf2 implementation is in progress in Qiskit/rustworkx#1235, but `dot_utils` might make sense to keep around longer term as it is slightly modified from the upstream rustworkx implementation to directly interface with `DAGCircuit` instead of a generic graph. Co-authored-by: Matthew Treinish <[email protected]> Co-authored-by: Raynel Sanchez <[email protected]> Co-authored-by: Elena Peña Tapia <[email protected]> Co-authored-by: Alexander Ivrii <[email protected]> Co-authored-by: Eli Arbel <[email protected]> Co-authored-by: John Lapeyre <[email protected]> Co-authored-by: Jake Lishman <[email protected]>
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Thanks for the additional review @IvanIsCoding!
I'm not sure I'm finding / understanding exactly what you're describing here. It looks like I think the only way to really get a Python token into the matchers would be to remove them from the Let me know if I'm misunderstanding the example you mentioned. It'd be neat to get things working without |
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* Port DAGCircuit to Rust This commit migrates the entirety of the `DAGCircuit` class to Rust. It fully replaces the Python version of the class. The primary advantage of this migration is moving from a Python space rustworkx directed graph representation to a Rust space petgraph (the upstream library for rustworkx) directed graph. Moving the graph data structure to rust enables us to directly interact with the DAG directly from transpiler passes in Rust in the future. This will enable a significant speed-up in those transpiler passes. Additionally, this should also improve the memory footprint as the DAGCircuit no longer stores `DAGNode` instances, and instead stores a lighter enum NodeType, which simply contains a `PackedInstruction` or the wire objects directly. Internally, the new Rust-based `DAGCircuit` uses a `petgraph::StableGraph` with node weights of type `NodeType` and edge weights of type `Wire`. The NodeType enum contains variants for `QubitIn`, `QubitOut`, `ClbitIn`, `ClbitOut`, and `Operation`, which should save us from all of the `isinstance` checking previously needed when working with `DAGNode` Python instances. The `Wire` enum contains variants `Qubit`, `Clbit`, and `Var`. As the full Qiskit data model is not rust-native at this point while all the class code in the `DAGCircuit` exists in Rust now, there are still sections that rely on Python or actively run Python code via Rust to function. These typically involve anything that uses `condition`, control flow, classical vars, calibrations, bit/register manipulation, etc. In the future as we either migrate this functionality to Rust or deprecate and remove it this can be updated in place to avoid the use of Python. API access from Python-space remains in terms of `DAGNode` instances to maintain API compatibility with the Python implementation. However, internally, we convert to and deal in terms of NodeType. When the user requests a particular node via lookup or iteration, we inflate an ephemeral `DAGNode` based on the internal `NodeType` and give them that. This is very similar to what was done in #10827 when porting CircuitData to Rust. As part of this porting there are a few small differences to keep in mind with the new Rust implementation of DAGCircuit. The first is that the topological ordering is slightly different with the new DAGCircuit. Previously, the Python version of `DAGCircuit` using a lexicographical topological sort key which was basically `"0,1,0,2"` where the first `0,1` are qargs on qubit indices `0,1` for nodes and `0,2` are cargs on clbit indices `0,2`. However, the sort key has now changed to be `(&[Qubit(0), Qubit(1)], &[Clbit(0), Clbit(2)])` in rust in this case which for the most part should behave identically, but there are some edge cases that will appear where the sort order is different. It will always be a valid topological ordering as the lexicographical key is used as a tie breaker when generating a topological sort. But if you're relaying on the exact same sort order there will be differences after this PR. The second is that a lot of undocumented functionality in the DAGCircuit which previously worked because of Python's implicit support for interacting with data structures is no longer functional. For example, previously the `DAGCircuit.qubits` list could be set directly (as the circuit visualizers previously did), but this was never documented as supported (and would corrupt the DAGCircuit). Any functionality like this we'd have to explicit include in the Rust implementation and as they were not included in the documented public API this PR opted to remove the vast majority of this type of functionality. The last related thing might require future work to mitigate is that this PR breaks the linkage between `DAGNode` and the underlying `DAGCirucit` object. In the Python implementation the `DAGNode` objects were stored directly in the `DAGCircuit` and when an API method returned a `DAGNode` from the DAG it was a shared reference to the underlying object in the `DAGCircuit`. This meant if you mutated the `DAGNode` it would be reflected in the `DAGCircuit`. This was not always a sound usage of the API as the `DAGCircuit` was implicitly caching many attributes of the DAG and you should always be using the `DAGCircuit` API to mutate any nodes to prevent any corruption of the `DAGCircuit`. However, now as the underlying data store for nodes in the DAG are no longer the python space objects returned by `DAGCircuit` methods mutating a `DAGNode` will not make any change in the underlying `DAGCircuit`. This can come as quite the surprise at first, especially if you were relying on this side effect, even if it was unsound. It's also worth noting that 2 large pieces of functionality from rustworkx are included in this PR. These are the new files `rustworkx_core_vnext` and `dot_utils` which are rustworkx's VF2 implementation and its dot file generation. As there was not a rust interface exposed for this functionality from rustworkx-core there was no way to use these functions in rustworkx. Until these interfaces added to rustworkx-core in future releases we'll have to keep these local copies. The vf2 implementation is in progress in Qiskit/rustworkx#1235, but `dot_utils` might make sense to keep around longer term as it is slightly modified from the upstream rustworkx implementation to directly interface with `DAGCircuit` instead of a generic graph. Co-authored-by: Matthew Treinish <[email protected]> Co-authored-by: Raynel Sanchez <[email protected]> Co-authored-by: Elena Peña Tapia <[email protected]> Co-authored-by: Alexander Ivrii <[email protected]> Co-authored-by: Eli Arbel <[email protected]> Co-authored-by: John Lapeyre <[email protected]> Co-authored-by: Jake Lishman <[email protected]> * Update visual mpl circuit drawer references Right now there is a bug in the matplotlib circuit visualizer likely caused by the new `__eq__` implementation for `DAGOpNode` that didn't exist before were some gates are missing from the visualization. In the interest of unblocking this PR this commit updates the references for these cases temporarily until this issue is fixed. * Ensure DAGNode.sort_key is always a string Previously the sort_key attribute of the Python space DAGCircuit was incorrectly being set to `None` for rust generated node objects. This was done as for the default path the sort key is determined from the rust domain's representation of qubits and there is no analogous data in the Python object. However, this was indavertandly a breaking API change as sort_key is expected to always be a string. This commit adds a default string to use for all node types so that we always have a reasonable value that matches the typing of the class. A future step is likely to add back the `dag` kwarg to the node types and generate the string on the fly from the rust space data. * Make Python argument first in Param::eq and Param::is_close The standard function signature convention for functions that take a `py: Python` argument is to make the Python argument the first (or second after `&self`). The `Param::eq` and `Param::is_close` methods were not following this convention and had `py` as a later argument in the signature. This commit corrects the oversight. * Fix merge conflict with #12943 With the recent merge with main we pulled in #12943 which conflicted with the rust space API changes made in this PR branch. This commit updates the usage to conform with the new interface introduced in this PR. * Add release notes and test for invalid args on apply methods This commit adds several release notes to document this change. This includes a feature note to describe the high level change and the user facing benefit (mainly reduced memory consumption for DAGCircuits), two upgrade notes to document the differences with shared references caused by the new data structure, and a fix note documenting the fix for how qargs and cargs are handled on `.apply_operation_back()` and `.apply_operation_front()`. Along with the fix note a new unit test is added to serve as a regression test so that we don't accidentally allow adding cargs as qargs and vice versa in the future. * Restore `inplace` argument functionality for substitute_node() This commit restores the functionality of the `inplace` argument for `substitute_node()` and restores the tests validating the object identity when using the flag. This flag was originally excluded from the implementation because the Rust representation of the dag is not a shared reference with Python space and the flag doesn't really mean the same thing as there is always a second copy of the data for Python space now. The implementation here is cheating slighty as we're passed in the DAG node by reference it relies on that reference to update the input node at the same time we update the dag. Unlike the previous Python implementation where we were updating the node in place and the `inplace` argument was slightly faster because everything was done by reference. The rust space data is still a compressed copy of the data we return to Python so the `inplace` flag will be slightly more inefficient as we need to copy to update the Python space representation in addition to the rust version. * Revert needless dict() cast on metadata in dag_to_circuit() This commit removes an unecessary `dict()` cast on the `dag.metadata` when setting it on `QuantumCircuit.metadata` in `qiskit.converters.dag_to_circuit()`. This slipped in at some point during the development of this PR and it's not clear why, but it isn't needed so this removes it. * Add code comment for DAGOpNode.__eq__ parameter checking This commit adds a small inline code comment to make it clear why we skip parameter comparisons in DAGOpNode.__eq__ for python ops. It might not be clear why the value is hard coded to `true` in this case, as this check is done via Python so we don't need to duplicate it in rust space. * Raise a ValueError on DAGNode creation with invalid index This commit adds error checking to the DAGNode constructor to raise a PyValueError if the input index is not valid (any index < -1). Previously this would have panicked instead of raising a user catchable error. * Use macro argument to set python getter/setter name This commit updates the function names for `get__node_id` and `set__node_id` method to use a name that clippy is happy with and leverage the pyo3 macros to set the python space name correctly instead of using the implicit naming rules. * Remove Ord and PartialOrd derives from interner::Index The Ord and PartialOrd traits were originally added to the Index struct so they could be used for the sort key in lexicographical topological sorting. However, that approach was abandonded during the development of this PR and instead the expanded Qubit and Clbit indices were used instead. This left the ordering traits as unnecessary on Index and potentially misleading. This commit just opts to remove them as they're not needed anymore. * Fix missing nodes in matplotlib drawer. Previously, the change in equality for DAGNodes was causing nodes to clobber eachother in the matplotlib drawer's tracking data structures when used as keys to maps. To fix this, we ensure that all nodes have a unique ID across layers before constructing the matplotlib drawer. They actually of course _do_ in the original DAG, but we don't really care what the original IDs are, so we just make them up. Writing to _node_id on a DAGNode may seem odd, but it exists in the old Python API (prior to being ported to Rust) and doesn't actually mutate the DAG at all since DAGNodes are ephemeral. * Revert "Update visual mpl circuit drawer references" With the previous commit the bug in the matplotlib drawer causing the images to diverge should be fixed. This commit reverts the change to the reference images as there should be no difference now. This reverts commit 1e4e6f3. * Update visual mpl circuit drawer references for control flow circuits The earlier commit that "fixed" the drawers corrected the visualization to match expectations in most cases. However after restoring the references to what's on main several comparison tests with control flow in the circuit were still failing. The failure mode looks similar to the other cases, but across control flow blocks instead of at the circuit level. This commit temporarily updates the references of these to the state of what is generated currently to unblock CI. If/when we have a fix this commit can be reverted. * Fix edge cases in DAGOpNode.__eq__ This commit fixes a couple of edge cases in DAGOpNode.__eq__ method around the python interaction for the method. The first is that in the case where we had python object parameter types for the gates we weren't comparing them at all. This is fixed so we use python object equality for the params in this case. Then we were dropping the error handling in the case of using python for equality, this fixes it to return the error to users if the equality check fails. Finally a comment is added to explain the expected use case for `DAGOpNode.__eq__` and why parameter checking is more strict than elsewhere. * Remove Param::add() for global phase addition This commit removes the Param::add() method and instead adds a local private function to the `dag_circuit` module for doing global phase addition. Previously the `Param::add()` method was used solely for adding global phase in `DAGCircuit` and it took some shortcuts knowing that context. This made the method implementation ill suited as a general implementation. * More complete fix for matplotlib drawer. * Revert "Update visual mpl circuit drawer references for control flow circuits" This reverts commit 9a6f953. * Unify rayon versions in workspace * Remove unused _GLOBAL_NID. * Use global monotonic ID counter for ids in drawer The fundamental issue with matplotlib visualizations of control flow is that locally in the control flow block the nodes look the same but are stored in an outer circuit dictionary. If the gates are the same and on the same qubits and happen to have the same node id inside the different control flow blocks the drawer would think it's already drawn the node and skip it incorrectly. The previous fix for this didn't go far enough because it wasn't accounting for the recursive execution of the drawer for inner blocks (it also didn't account for LayerSpoolers of the same length). * Re-add missing documentation * Remove unused BitData iterator stuff. * Make types, dag, and bit count methods public This commit makes some attributes of the dag circuit public as they will need to be accessible from the accelerate crate to realistically start using the DAGCircuit for rust transpiler passes. * Make Wire pickle serialization explicit This commit pivots away from using the PyO3 crate's conversion traits for specialized pickle serialization output of Wire objects. The output of the previous traits wasn't really intended for representing a Wire in Python but only for pickle serialization. This commit migrates these to custom methods, without a trait, to make it clear they're only for pickle. * Make py token usage explicit in _VarIndexMap The _VarIndexMap type was designed to look like an IndexMap but is actually an inner python dictionary. This is because `Var` types are still defined in python and we need to use a dictionary if we have `Var` objects as keys in the mapping. In the interest of looking like an IndexMap all the methods (except for 1) used `with_gil` internally to work with the dictionary. This could add unecessary overhead and to make it explicit that there is python involvement with this struct's methods this commit adds a py: Python argument to all the methods and removes the `with_gil` usage. * Make all pub(crate) visibility pub * Remove unused method * Reorganize code structure around PyVariableMapper and BitLocations * Add missing var wires to .get_wires() method In the porting of the get_wires() method to Rust the handling of Var wires was missed in the output of the method. This commit corrects the oversight and adds them to the output. * Raise TypeError not ValueError for invalid input to set_global_phase * De-duplicate check logic for op node adding methods The methods for checking the input was valid on apply_operation_back, apply_operation_front, and _apply_op_node_back were all identical. This combines them into a single method to deduplicate the code. * Improve collect_1q_runs() filter function The filter function for collect_1q_runs() was needlessly building a matrix for all the standard gates when all we need to know in that case is whether the standard gate is parameterized or not. If it's not then we're guaranteed to have a matrix available. This commit updates the filter logic to account for this and improve it's throughput on standard gates. * Use swap_remove instead of shift_remove * Combine input and output maps into single mapping This commit combines the `DAGCircuit` `qubit_input_map` and `qubit_output_map` fields into a single `IndexMap` `qubit_io_map` (and the same for `clbit_input_map` and `clbit_output_map` going to `clbit_io_map`). That stores the input and output as 2 element array where the first element is the input node index and the second element is the output node index. This reduces the number of lookups we need to do in practice and also reduces the memory overhead of `DAGCircuit`. * Ensure we account for clbits in depth() short circuit check * Also account for Vars in DAGCircuit.width() The number of vars should be included in the return from the width() method. This was previously missing in the new implementation of this method. * Remove duplicated _get_node() method The `_get_node()` method was duplicated with the already public `node()` method. This commit removes the duplicate and updates it's only usage in the code base. * Handle Var wires in classical_predecessors This method was missing the handling for var wires, this commit corrects the oversight. * Remove stray comment * Use Operation::control_flow() instead of isinstance checking * Use &str for increment_op and decrement_op This commit reworks the interface for the increment_op and decrement_op methods to work by reference instead of passing owned String objects to the methods. Using owned String objects was resulting in unecessary allocations and extra overhead that could be avoided. There are still a few places we needed to copy strings to ensure we're not mutating things while we have references to nodes in the dag, typically only in the decrement/removal case. But this commit reduces the number of String copies we need to make in the DAGCircuit. * Also include vars in depth short circuit * Fix typing for controlflow name lookup in count_ops * Fix .properties() method to include operations field The .properties() method should have included the output of .count_ops() in its dictionary return but this was commented out temporarily while other pieces of this PR were fixed. This commit circles back to it and adds the missing field from the output. As an aside we should probably deprecate the .properties() method for removal in 2.0 it doesn't seem to be the most useful method in practice. * Add missing Var wire handling to py_nodes_on_wire * Add back optimization to avoid isinstance in op_nodes This commit adds back an optimization to the op_nodes dag method to avoid doing a python space op comparison when we're filtering on non-standard gates and evaluating a standard gate. In these cases we know that the filter will not match purely from rust without needing a python space op object creation or an isinstance call so we can avoid the overhead of doing that. * Simplify/deduplicate __eq__ method This commit reworks the logic in the DAGCircuit.__eq__ method implementation to simplify the code a bit and make it less verbose and duplicated. * Invalidate cached py op when needed in substitute_node_with_dag This commit fixes a potential issue in substitute_node_with_dag() when the propagate_condition flag was set we were not invalidating cached py ops when adding a new condition based on a propagated condition. This could potentially cause the incorrect object to be returned to Python after calling this method. This fixes the issues by clearing the cached node so that when returning the op to python we are regenerating the python object. * Copy-editing suggestions for release notes Co-authored-by: John Lapeyre <[email protected]> * Fix and simplify separable_circuits() This commit fixes and simplifies the separable_circuits() method. At it's core the method is building a subgraph of the original dag for each weakly connected component in the dag with a little bit of extra tracking to make sure the graph is a valid DAGCircuit. Instead of trying to do this manually this commit updates the method implementation to leverage the tools petgraph gives us for filtering graphs. This both fixes a bug identified in review but also simplifies the code. * Add clbit removal test * Move to using a Vec<[NodeIndex; 2]> for io maps This commit migrates the qubit_io_map and clbit_io_map to go from a type of `IndexMap<Qubit, [NodeIndex; 2], RandomState>` to `Vec<[NodeIndex; 2]>`. Our qubit indices (represented by the `Qubit` type) must be a contiguous set for the circuit to be valid, and using an `IndexMap` for these mappings of bit to input and output nodes only really improved performance in the removal case, but at the cost of additional runtime overhead for accessing the data. Since removals are rare and also inefficient because it needs to reindex the entire dag already we should instead optimize for the accessing the data. Since we have contiguous indices using a Vec is a natural structure to represent this mapping. * Make add_clbits() signature the same as add_qubits() At some point during the development of this PR the function signatures between `add_qubits()` and `add_clbits()` diverged between taking a `Vec<Bound<PyAny>>` and `&Bound<PySequence>`. In general they're are comprable but since we are going to be working with a `Vec<>` in the function body this is a better choice to let PyO3 worry about the conversion for us. Additionally, this is a more natural signature for rust consumption. This commit just updates `add_clbits()` to use a Vec too. * Add attribution comment to num_tensor_factors() method * Add py argument to add_declared_var() * Remove unnecessarily Python-space check * Correct typo in `to_pickle` method --------- Co-authored-by: Matthew Treinish <[email protected]> Co-authored-by: Raynel Sanchez <[email protected]> Co-authored-by: Elena Peña Tapia <[email protected]> Co-authored-by: Alexander Ivrii <[email protected]> Co-authored-by: Eli Arbel <[email protected]> Co-authored-by: John Lapeyre <[email protected]> Co-authored-by: Jake Lishman <[email protected]>
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This commit migrates the entirety of the `DAGCircuit` class to Rust. It fully replaces the Python version of the class. The primary advantage of this migration is moving from a Python space rustworkx directed graph representation to a Rust space petgraph (the upstream library for rustworkx) directed graph. Moving the graph data structure to rust enables us to directly interact with the DAG directly from transpiler passes in Rust in the future. This will enable a significant speed-up in those transpiler passes. Additionally, this should also improve the memory footprint as the DAGCircuit no longer stores `DAGNode` instances, and instead stores a lighter enum NodeType, which simply contains a `PackedInstruction` or the wire objects directly. Internally, the new Rust-based `DAGCircuit` uses a `petgraph::StableGraph` with node weights of type `NodeType` and edge weights of type `Wire`. The NodeType enum contains variants for `QubitIn`, `QubitOut`, `ClbitIn`, `ClbitOut`, and `Operation`, which should save us from all of the `isinstance` checking previously needed when working with `DAGNode` Python instances. The `Wire` enum contains variants `Qubit`, `Clbit`, and `Var`. As the full Qiskit data model is not rust-native at this point while all the class code in the `DAGCircuit` exists in Rust now, there are still sections that rely on Python or actively run Python code via Rust to function. These typically involve anything that uses `condition`, control flow, classical vars, calibrations, bit/register manipulation, etc. In the future as we either migrate this functionality to Rust or deprecate and remove it this can be updated in place to avoid the use of Python. API access from Python-space remains in terms of `DAGNode` instances to maintain API compatibility with the Python implementation. However, internally, we convert to and deal in terms of NodeType. When the user requests a particular node via lookup or iteration, we inflate an ephemeral `DAGNode` based on the internal `NodeType` and give them that. This is very similar to what was done in Qiskit#10827 when porting CircuitData to Rust. As part of this porting there are a few small differences to keep in mind with the new Rust implementation of DAGCircuit. The first is that the topological ordering is slightly different with the new DAGCircuit. Previously, the Python version of `DAGCircuit` using a lexicographical topological sort key which was basically `"0,1,0,2"` where the first `0,1` are qargs on qubit indices `0,1` for nodes and `0,2` are cargs on clbit indices `0,2`. However, the sort key has now changed to be `(&[Qubit(0), Qubit(1)], &[Clbit(0), Clbit(2)])` in rust in this case which for the most part should behave identically, but there are some edge cases that will appear where the sort order is different. It will always be a valid topological ordering as the lexicographical key is used as a tie breaker when generating a topological sort. But if you're relaying on the exact same sort order there will be differences after this PR. The second is that a lot of undocumented functionality in the DAGCircuit which previously worked because of Python's implicit support for interacting with data structures is no longer functional. For example, previously the `DAGCircuit.qubits` list could be set directly (as the circuit visualizers previously did), but this was never documented as supported (and would corrupt the DAGCircuit). Any functionality like this we'd have to explicit include in the Rust implementation and as they were not included in the documented public API this PR opted to remove the vast majority of this type of functionality. The last related thing might require future work to mitigate is that this PR breaks the linkage between `DAGNode` and the underlying `DAGCirucit` object. In the Python implementation the `DAGNode` objects were stored directly in the `DAGCircuit` and when an API method returned a `DAGNode` from the DAG it was a shared reference to the underlying object in the `DAGCircuit`. This meant if you mutated the `DAGNode` it would be reflected in the `DAGCircuit`. This was not always a sound usage of the API as the `DAGCircuit` was implicitly caching many attributes of the DAG and you should always be using the `DAGCircuit` API to mutate any nodes to prevent any corruption of the `DAGCircuit`. However, now as the underlying data store for nodes in the DAG are no longer the python space objects returned by `DAGCircuit` methods mutating a `DAGNode` will not make any change in the underlying `DAGCircuit`. This can come as quite the surprise at first, especially if you were relying on this side effect, even if it was unsound. It's also worth noting that 2 large pieces of functionality from rustworkx are included in this PR. These are the new files `rustworkx_core_vnext` and `dot_utils` which are rustworkx's VF2 implementation and its dot file generation. As there was not a rust interface exposed for this functionality from rustworkx-core there was no way to use these functions in rustworkx. Until these interfaces added to rustworkx-core in future releases we'll have to keep these local copies. The vf2 implementation is in progress in Qiskit/rustworkx#1235, but `dot_utils` might make sense to keep around longer term as it is slightly modified from the upstream rustworkx implementation to directly interface with `DAGCircuit` instead of a generic graph. Co-authored-by: Matthew Treinish <[email protected]> Co-authored-by: Raynel Sanchez <[email protected]> Co-authored-by: Elena Peña Tapia <[email protected]> Co-authored-by: Alexander Ivrii <[email protected]> Co-authored-by: Eli Arbel <[email protected]> Co-authored-by: John Lapeyre <[email protected]> Co-authored-by: Jake Lishman <[email protected]>
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* init * up * lint * . * up * before cache * with cache * correct * cleaned up * lint reno * Update Cargo.lock * . * up * . * revert op * . * . * . * . * Delete Cargo.lock * . * corrected string comparison * removed Operator class from operation.rs * . * Apply suggestions from code review Co-authored-by: Raynel Sanchez <[email protected]> * comments from code review * Port DAGCircuit to Rust This commit migrates the entirety of the `DAGCircuit` class to Rust. It fully replaces the Python version of the class. The primary advantage of this migration is moving from a Python space rustworkx directed graph representation to a Rust space petgraph (the upstream library for rustworkx) directed graph. Moving the graph data structure to rust enables us to directly interact with the DAG directly from transpiler passes in Rust in the future. This will enable a significant speed-up in those transpiler passes. Additionally, this should also improve the memory footprint as the DAGCircuit no longer stores `DAGNode` instances, and instead stores a lighter enum NodeType, which simply contains a `PackedInstruction` or the wire objects directly. Internally, the new Rust-based `DAGCircuit` uses a `petgraph::StableGraph` with node weights of type `NodeType` and edge weights of type `Wire`. The NodeType enum contains variants for `QubitIn`, `QubitOut`, `ClbitIn`, `ClbitOut`, and `Operation`, which should save us from all of the `isinstance` checking previously needed when working with `DAGNode` Python instances. The `Wire` enum contains variants `Qubit`, `Clbit`, and `Var`. As the full Qiskit data model is not rust-native at this point while all the class code in the `DAGCircuit` exists in Rust now, there are still sections that rely on Python or actively run Python code via Rust to function. These typically involve anything that uses `condition`, control flow, classical vars, calibrations, bit/register manipulation, etc. In the future as we either migrate this functionality to Rust or deprecate and remove it this can be updated in place to avoid the use of Python. API access from Python-space remains in terms of `DAGNode` instances to maintain API compatibility with the Python implementation. However, internally, we convert to and deal in terms of NodeType. When the user requests a particular node via lookup or iteration, we inflate an ephemeral `DAGNode` based on the internal `NodeType` and give them that. This is very similar to what was done in #10827 when porting CircuitData to Rust. As part of this porting there are a few small differences to keep in mind with the new Rust implementation of DAGCircuit. The first is that the topological ordering is slightly different with the new DAGCircuit. Previously, the Python version of `DAGCircuit` using a lexicographical topological sort key which was basically `"0,1,0,2"` where the first `0,1` are qargs on qubit indices `0,1` for nodes and `0,2` are cargs on clbit indices `0,2`. However, the sort key has now changed to be `(&[Qubit(0), Qubit(1)], &[Clbit(0), Clbit(2)])` in rust in this case which for the most part should behave identically, but there are some edge cases that will appear where the sort order is different. It will always be a valid topological ordering as the lexicographical key is used as a tie breaker when generating a topological sort. But if you're relaying on the exact same sort order there will be differences after this PR. The second is that a lot of undocumented functionality in the DAGCircuit which previously worked because of Python's implicit support for interacting with data structures is no longer functional. For example, previously the `DAGCircuit.qubits` list could be set directly (as the circuit visualizers previously did), but this was never documented as supported (and would corrupt the DAGCircuit). Any functionality like this we'd have to explicit include in the Rust implementation and as they were not included in the documented public API this PR opted to remove the vast majority of this type of functionality. The last related thing might require future work to mitigate is that this PR breaks the linkage between `DAGNode` and the underlying `DAGCirucit` object. In the Python implementation the `DAGNode` objects were stored directly in the `DAGCircuit` and when an API method returned a `DAGNode` from the DAG it was a shared reference to the underlying object in the `DAGCircuit`. This meant if you mutated the `DAGNode` it would be reflected in the `DAGCircuit`. This was not always a sound usage of the API as the `DAGCircuit` was implicitly caching many attributes of the DAG and you should always be using the `DAGCircuit` API to mutate any nodes to prevent any corruption of the `DAGCircuit`. However, now as the underlying data store for nodes in the DAG are no longer the python space objects returned by `DAGCircuit` methods mutating a `DAGNode` will not make any change in the underlying `DAGCircuit`. This can come as quite the surprise at first, especially if you were relying on this side effect, even if it was unsound. It's also worth noting that 2 large pieces of functionality from rustworkx are included in this PR. These are the new files `rustworkx_core_vnext` and `dot_utils` which are rustworkx's VF2 implementation and its dot file generation. As there was not a rust interface exposed for this functionality from rustworkx-core there was no way to use these functions in rustworkx. Until these interfaces added to rustworkx-core in future releases we'll have to keep these local copies. The vf2 implementation is in progress in Qiskit/rustworkx#1235, but `dot_utils` might make sense to keep around longer term as it is slightly modified from the upstream rustworkx implementation to directly interface with `DAGCircuit` instead of a generic graph. Co-authored-by: Matthew Treinish <[email protected]> Co-authored-by: Raynel Sanchez <[email protected]> Co-authored-by: Elena Peña Tapia <[email protected]> Co-authored-by: Alexander Ivrii <[email protected]> Co-authored-by: Eli Arbel <[email protected]> Co-authored-by: John Lapeyre <[email protected]> Co-authored-by: Jake Lishman <[email protected]> * Update visual mpl circuit drawer references Right now there is a bug in the matplotlib circuit visualizer likely caused by the new `__eq__` implementation for `DAGOpNode` that didn't exist before were some gates are missing from the visualization. In the interest of unblocking this PR this commit updates the references for these cases temporarily until this issue is fixed. * Ensure DAGNode.sort_key is always a string Previously the sort_key attribute of the Python space DAGCircuit was incorrectly being set to `None` for rust generated node objects. This was done as for the default path the sort key is determined from the rust domain's representation of qubits and there is no analogous data in the Python object. However, this was indavertandly a breaking API change as sort_key is expected to always be a string. This commit adds a default string to use for all node types so that we always have a reasonable value that matches the typing of the class. A future step is likely to add back the `dag` kwarg to the node types and generate the string on the fly from the rust space data. * Make Python argument first in Param::eq and Param::is_close The standard function signature convention for functions that take a `py: Python` argument is to make the Python argument the first (or second after `&self`). The `Param::eq` and `Param::is_close` methods were not following this convention and had `py` as a later argument in the signature. This commit corrects the oversight. * Fix merge conflict with #12943 With the recent merge with main we pulled in #12943 which conflicted with the rust space API changes made in this PR branch. This commit updates the usage to conform with the new interface introduced in this PR. * Add release notes and test for invalid args on apply methods This commit adds several release notes to document this change. This includes a feature note to describe the high level change and the user facing benefit (mainly reduced memory consumption for DAGCircuits), two upgrade notes to document the differences with shared references caused by the new data structure, and a fix note documenting the fix for how qargs and cargs are handled on `.apply_operation_back()` and `.apply_operation_front()`. Along with the fix note a new unit test is added to serve as a regression test so that we don't accidentally allow adding cargs as qargs and vice versa in the future. * Restore `inplace` argument functionality for substitute_node() This commit restores the functionality of the `inplace` argument for `substitute_node()` and restores the tests validating the object identity when using the flag. This flag was originally excluded from the implementation because the Rust representation of the dag is not a shared reference with Python space and the flag doesn't really mean the same thing as there is always a second copy of the data for Python space now. The implementation here is cheating slighty as we're passed in the DAG node by reference it relies on that reference to update the input node at the same time we update the dag. Unlike the previous Python implementation where we were updating the node in place and the `inplace` argument was slightly faster because everything was done by reference. The rust space data is still a compressed copy of the data we return to Python so the `inplace` flag will be slightly more inefficient as we need to copy to update the Python space representation in addition to the rust version. * Revert needless dict() cast on metadata in dag_to_circuit() This commit removes an unecessary `dict()` cast on the `dag.metadata` when setting it on `QuantumCircuit.metadata` in `qiskit.converters.dag_to_circuit()`. This slipped in at some point during the development of this PR and it's not clear why, but it isn't needed so this removes it. * Add code comment for DAGOpNode.__eq__ parameter checking This commit adds a small inline code comment to make it clear why we skip parameter comparisons in DAGOpNode.__eq__ for python ops. It might not be clear why the value is hard coded to `true` in this case, as this check is done via Python so we don't need to duplicate it in rust space. * Raise a ValueError on DAGNode creation with invalid index This commit adds error checking to the DAGNode constructor to raise a PyValueError if the input index is not valid (any index < -1). Previously this would have panicked instead of raising a user catchable error. * Use macro argument to set python getter/setter name This commit updates the function names for `get__node_id` and `set__node_id` method to use a name that clippy is happy with and leverage the pyo3 macros to set the python space name correctly instead of using the implicit naming rules. * Remove Ord and PartialOrd derives from interner::Index The Ord and PartialOrd traits were originally added to the Index struct so they could be used for the sort key in lexicographical topological sorting. However, that approach was abandonded during the development of this PR and instead the expanded Qubit and Clbit indices were used instead. This left the ordering traits as unnecessary on Index and potentially misleading. This commit just opts to remove them as they're not needed anymore. * Fix missing nodes in matplotlib drawer. Previously, the change in equality for DAGNodes was causing nodes to clobber eachother in the matplotlib drawer's tracking data structures when used as keys to maps. To fix this, we ensure that all nodes have a unique ID across layers before constructing the matplotlib drawer. They actually of course _do_ in the original DAG, but we don't really care what the original IDs are, so we just make them up. Writing to _node_id on a DAGNode may seem odd, but it exists in the old Python API (prior to being ported to Rust) and doesn't actually mutate the DAG at all since DAGNodes are ephemeral. * Revert "Update visual mpl circuit drawer references" With the previous commit the bug in the matplotlib drawer causing the images to diverge should be fixed. This commit reverts the change to the reference images as there should be no difference now. This reverts commit 1e4e6f3. * Update visual mpl circuit drawer references for control flow circuits The earlier commit that "fixed" the drawers corrected the visualization to match expectations in most cases. However after restoring the references to what's on main several comparison tests with control flow in the circuit were still failing. The failure mode looks similar to the other cases, but across control flow blocks instead of at the circuit level. This commit temporarily updates the references of these to the state of what is generated currently to unblock CI. If/when we have a fix this commit can be reverted. * Apply suggestions from code review Co-authored-by: Raynel Sanchez <[email protected]> * code review * Fix edge cases in DAGOpNode.__eq__ This commit fixes a couple of edge cases in DAGOpNode.__eq__ method around the python interaction for the method. The first is that in the case where we had python object parameter types for the gates we weren't comparing them at all. This is fixed so we use python object equality for the params in this case. Then we were dropping the error handling in the case of using python for equality, this fixes it to return the error to users if the equality check fails. Finally a comment is added to explain the expected use case for `DAGOpNode.__eq__` and why parameter checking is more strict than elsewhere. * Remove Param::add() for global phase addition This commit removes the Param::add() method and instead adds a local private function to the `dag_circuit` module for doing global phase addition. Previously the `Param::add()` method was used solely for adding global phase in `DAGCircuit` and it took some shortcuts knowing that context. This made the method implementation ill suited as a general implementation. * More complete fix for matplotlib drawer. * Revert "Update visual mpl circuit drawer references for control flow circuits" This reverts commit 9a6f953. * Unify rayon versions in workspace * Remove unused _GLOBAL_NID. * Use global monotonic ID counter for ids in drawer The fundamental issue with matplotlib visualizations of control flow is that locally in the control flow block the nodes look the same but are stored in an outer circuit dictionary. If the gates are the same and on the same qubits and happen to have the same node id inside the different control flow blocks the drawer would think it's already drawn the node and skip it incorrectly. The previous fix for this didn't go far enough because it wasn't accounting for the recursive execution of the drawer for inner blocks (it also didn't account for LayerSpoolers of the same length). * Remove unused BitData iterator stuff. * Fully port Optimize1qGatesDecomposition to Rust This commit builds off of #12550 and the other data model in Rust infrastructure and migrates the Optimize1qGatesDecomposition pass to operate fully in Rust. The full path of the transpiler pass now never leaves rust until it has finished modifying the DAGCircuit. There is still some python interaction necessary to handle parts of the data model that are still in Python, mainly calibrations and parameter expressions (for global phase). But otherwise the entirety of the pass operates in rust now. This is just a first pass at the migration here, it moves the pass to be a single for loop in rust. The next steps here are to look at operating the pass in parallel. There is no data dependency between the optimizations being done by the pass so we should be able to the throughput of the pass by leveraging multithreading to handle each run in parallel. This commit does not attempt this though, because of the Python dependency and also the data structures around gates and the dag aren't really setup for multithreading yet and there likely will need to be some work to support that (this pass is a good candidate to work through the bugs on that). Part of #12208 * remove with_gil in favor of passing python tokens as params * Apply suggestions from code review Co-authored-by: Raynel Sanchez <[email protected]> * fmt * python serialization * deprecation * Update commutation_checker.py * heh * init * let Pytuple collect * lint * First set of comments - use Qubit/Clbit - more info on unsafe - update reno - use LazySet less - use OperationRef, avoid CircuitInstruction creation * Second part - clippy - no BigInt - more comments * Matrix speed & fix string sort -- could not use op.name() directly since sorted differently than Python, hence it's back to BigInt * have the Python implementation use Rust * lint & tools * remove unsafe blocks * One more try to avoid segfaulty windows -- if that doesn't work maybe revert the change the the Py CommChecker uses Rust * Original version Co-authored-by: Sebastian Brandhofer <[email protected]> * Sync with updated CommutationChecker todo: shouldn't make the qubits interner public * Debug: disable cache trying to figure out why the windows CI fails (after being unable to locally reproduce we're using CI with a reduced set of tests) * ... second try * Update crates/accelerate/src/commutation_checker.rs Co-authored-by: Raynel Sanchez <[email protected]> * Restore azure config * Remove unused import * Revert "Debug: disable cache" This reverts commit c564b80. * Don't overallocate cache We were allocating a the cache hashmap with a capacity for max cache size entries every time we instantiated a new CommutationChecker. The max cache size is 1 million. This meant we were allocating 162MB everytime CommutationChecker.__new__ was called, which includes each time we instantiate it manually (which happens once on import), the CommutationAnalysis pass gets instantiated (twice per preset pass manager created with level 2 or 3), or a commutation checker instance is pickle deserialized. This ends up causing a fairly large memory regression and is the source of the CI failures on windows. Co-authored-by: Jake Lishman <[email protected]> * Cleanup parameter key type to handle edge conditions better This commit cleans up the ParameterKey type and usage to make it handle edge conditions better. The first is that the type just doesn't do the right thing for NaN, -0, or the infinities. Canonicalization is added for hash on -0 and the only constructor of the newtype adds a runtime guard against NaN and inifinity (positive or negative) to avoid that issue. The approach only makes sense as the cache is really there to guard us against unnecessary re-computing when we reiterate over the circuit > 1 time and nothing has changed for gates. Otherwise comparing floats like done in this PR does would not be a sound or an effective approach. * Remove unnecessary cache hit rate tracking * Undo test assertion changes * Undo unrelated test changes * Undo pending deprecation and unify commutation classes This commit removes the pending deprecation decorator from the python class definition as the Python class just internally is using the rust implementation now. This also removes directly using the rust implementation for the standard commutation library global as using the python class is exactly the same now. We can revisit if there is anything we want to deprecate and remove in 2.0 in a follow up PR. Personally, I think the cache management methods are all we really want to remove as the cache should be an internal implementation detail and not part of the public interface. * Undo gha config changes * Make serialization explicit This commit makes the pickling of cache entries explicit. Previously it was relying on conversion traits which hid some of the complexity but this uses a pair of conversion functions instead. * Remove stray SAFETY comment * Remove ddt usage from the tests Now that the python commutation checker and the rust commutation checker are the same thing the ddt parameterization of the commutation checker tests was unecessary duplication. This commit removes the ddt usage to restore having a single run of all the tests. * Update release note * Fix CommutationChecker class import * Remove invalid test assertion for no longer public attribute * Ray's review comments Co-authored-by: Raynel Sanchez <[email protected]> * Handle ``atol/rtol``, more error propagation * update to latest changes in commchecker * fix merge conflict remnants * re-use expensive quantities such as the relative placement and the parameter hash * add missing header * gentler error handling * review comments & more docs * Use vec over IndexSet + clippy - vec<vec> is slightly faster than vec<indexset> - add custom types to satisfies clippy's complex type complaint - don't handle Clbit/Var * Simplify python class construction Since this PR was first written the split between the python side and rust side of the CommutationChecker class has changed so that there are no longer separate classes anymore. The implementations are unified and the python space class just wraps an inner rust object. However, the construction of the CommutationAnalysis pass was still written assuming there was the possibility to get either a rust or Python object. This commit fixes this and the type change on the `comm_checker` attribute by removing the unnecessary logic. --------- Co-authored-by: Raynel Sanchez <[email protected]> Co-authored-by: Kevin Hartman <[email protected]> Co-authored-by: Matthew Treinish <[email protected]> Co-authored-by: Elena Peña Tapia <[email protected]> Co-authored-by: Alexander Ivrii <[email protected]> Co-authored-by: Eli Arbel <[email protected]> Co-authored-by: John Lapeyre <[email protected]> Co-authored-by: Jake Lishman <[email protected]> Co-authored-by: Julien Gacon <[email protected]> Co-authored-by: Raynel Sanchez <[email protected]>
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Summary
Ports Rustworkx's modified VF2 algorithm to
rustworkx-core, supporting genericpetgraphtypes likeStableGraph.Details
This implementation should work for
petgraph'sStableGraph,Graph, andGraphMap(though IIRC there is a bug inpetgraph's implementation of theirEdgeCounttrait forGraphMapwhich would likely cause issues until it gets fixededit: I believe it only triggers if edges are removed, so it'd likely be fine).In contrast with the original
petgraph::algo::isomorphismAPI which hides the fact that VF2 is used under the hood for isomorphism, this PR introduces the VF2 internals as a public interface (i.e.rustworkx_core::isomorphism::vf2), exposing traitsNodeMatcherandEdgeMatcherand structsVf2AlgorithmandVf2State, which can be used to further customize how VF2 is executed. We now use this in our Python API's implementation of(Di|)GraphVF2Mapping, for example. (...the only sort of "kludge" regarding the above is that I had to make a few fields onVf2AlgorithmandVf2Statepublic in order to support Python garbage collection requirements. If you've got a better idea, please leave a comment.)Changes from the Python impl
IsIsomorphicErroris introduced, which encapsulates the error types returned by the user providedNodeMatcherandEdgeMatcher.Vf2Algorithmnow formally implementsIterator, with anItemtype ofResult.To-do