Merge pull request #367 from xtrojak/209-cleanup-october-xmsannotator

Cleanup xmsannotator wrappers
RECETOX · Jun 26, 2023 · 1ab1a1d · 1ab1a1d
2 parents 038d752 + 3125565
commit 1ab1a1d
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diff --git a/.tt_skip b/.tt_skip
@@ -1,5 +1,3 @@
 tools/export_to_path
 tools/retip
-tools/october_recetox_xmsannotator
-tools/recetox_xmsannotator
 tools/query
diff --git a/tools/october_recetox_xmsannotator/.shed.yml b/tools/october_recetox_xmsannotator/.shed.yml
diff --git a/tools/october_recetox_xmsannotator/macros.xml b/tools/october_recetox_xmsannotator/macros.xml
diff --git a/tools/october_recetox_xmsannotator/october_recetox_xmsannotator_advanced.xml b/tools/october_recetox_xmsannotator/october_recetox_xmsannotator_advanced.xml
diff --git a/tools/recetox_xmsannotator/.shed.yml b/tools/recetox_xmsannotator/.shed.yml
@@ -4,15 +4,9 @@ homepage_url: "https://github.com/RECETOX/recetox-xMSannotator"
 categories:
   - Metabolomics
 repositories:
-  recetox_xmsannotator_simple:
-    description: "Annotate peak table using simple database matching"
-
-    include:
-      - recetox_xmsannotator_simple.xml
-      - macros.xml
   recetox_xmsannotator_advanced:
     description: "Annotate peak table using RT, m/z and mass defect based clustering, isotopic patterns, pathways and chemical score computation"
-
     include:
       - recetox_xmsannotator_advanced.xml
       - macros.xml
+      - utils.R