Infectieziekteonderzoek, Diagnostiek en laboratorium Surveillance-Bioinformatics (RIVM, The Netherlands)
- 13 followers
- Netherlands
- https://www.rivm.nl/en/international
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TrueConsense
TrueConsense PublicTrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alig…
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ViroConstrictor
ViroConstrictor PublicViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
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juno-typing
juno-typing PublicPipeline to perform bacterial typing (7-locus MLST and serotyping when appropriate). It works with several (but not all) species/genera.
Python 4
Repositories
- juno-assembly Public
Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics
RIVM-bioinformatics/juno-assembly’s past year of commit activity - juno-variant-typing Public
Juno pipeline for the interpretation of variants identified through reference-based mapping
RIVM-bioinformatics/juno-variant-typing’s past year of commit activity - juno-library Public
Package containing the basic classes that are used as base for the wrappers of the other Juno pipelines
RIVM-bioinformatics/juno-library’s past year of commit activity - skiml-cluster Public
RIVM-bioinformatics/skiml-cluster’s past year of commit activity - ViroConstrictor Public
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
RIVM-bioinformatics/ViroConstrictor’s past year of commit activity
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